PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013610664.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HD-ZIP

Protein Properties

Length: 230aa MW: 26549 Da PI: 7.5025

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013610664.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.6	2.1e-18	78	130	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++t+ ql Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k XP_013610664.1 78 KKRLTSGQLASLERSFQEEIKLDSDRKLKLSRELGLQPRQIAVWFQNRRARWK 130 45699***********************************************9 PP
2	HD-ZIP_I/II	114	9.4e-37	77	167	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kk+rl++ q+++LE+sF+ee kL+++rK +l+reLglqprq+avWFqnrRAR+k+kqlE+ y++L+++y+ +++e+++L++ev++Lr+ l+ XP_013610664.1 77 KKKRLTSGQLASLERSFQEEIKLDSDRKLKLSRELGLQPRQIAVWFQNRRARWKAKQLEQLYDSLRQEYEVVSREKQMLHEEVKKLRALLR 167 9**************************************************************************************8775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.27E-18	67	134	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.568	72	132	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.8E-19	72	136	IPR009057	Homeodomain-like
SMART	SM00389	3.0E-16	74	136	IPR001356	Homeobox domain
CDD	cd00086	2.34E-14	77	133	No hit	No description
Pfam	PF00046	5.4E-16	78	130	IPR001356	Homeobox domain
PRINTS	PR00031	5.6E-5	103	112	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	107	130	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.6E-5	112	128	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MEWTTTRNLE NVRVAFMPPP WPESSSFNSL HSSNYDPYSG NSCTPTDAQI GPVISVPESE 60 KIINAYQFPS NDNEMIKKKR LTSGQLASLE RSFQEEIKLD SDRKLKLSRE LGLQPRQIAV 120 WFQNRRARWK AKQLEQLYDS LRQEYEVVSR EKQMLHEEVK KLRALLRDQG LIKKQISGGE 180 DMTEIPSVVI AHPRAENLNN NQINGENQIY GIDQYNNPML IASSCWPPFP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	132	RRARWKAKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Widely expressed. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013610664.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB005235	1e-112	AB005235.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MED24.
GenBank	AL162506	1e-112	AL162506.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F17C15 (ESSA project).
GenBank	CP002688	1e-112	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBank	EU352015	1e-112	EU352015.1 Arabidopsis thaliana ecotype Col-0 At5g03790 gene, partial cds.
GenBank	EU352016	1e-112	EU352016.1 Arabidopsis thaliana ecotype Landsberg erecta At5g03790 gene, partial cds.
GenBank	EU352018	1e-112	EU352018.1 Arabidopsis thaliana ecotype Di-G At5g03790 gene, partial cds.
GenBank	EU352019	1e-112	EU352019.1 Arabidopsis thaliana ecotype Da (1)-12 At5g03790 gene, partial cds.
GenBank	EU352020	1e-112	EU352020.1 Arabidopsis thaliana ecotype Li-3 At5g03790 gene, partial cds.
GenBank	EU352022	1e-112	EU352022.1 Arabidopsis thaliana ecotype PHW-32 At5g03790 gene, partial cds.
GenBank	EU352023	1e-112	EU352023.1 Arabidopsis thaliana ecotype Sha At5g03790 gene, partial cds.
GenBank	EU352026	1e-112	EU352026.1 Arabidopsis thaliana ecotype Co-1 At5g03790 gene, partial cds.
GenBank	EU352027	1e-112	EU352027.1 Arabidopsis thaliana ecotype Gr-3 At5g03790 gene, partial cds.
GenBank	EU352028	1e-112	EU352028.1 Arabidopsis thaliana ecotype Mt-0 At5g03790 gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013610664.1	1e-171	PREDICTED: putative homeobox-leucine zipper protein ATHB-51
Refseq	XP_013610665.1	1e-171	PREDICTED: putative homeobox-leucine zipper protein ATHB-51
Swissprot	Q9LZR0	1e-143	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A0D3EI30	1e-170	A0A0D3EI30_BRAOL; Uncharacterized protein
STRING	Bo9g181720.1	1e-171	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1660	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	1e-129	homeobox 51

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]