PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013610676.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 183aa    MW: 20617.1 Da    PI: 7.6119
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013610676.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.16.6e-32101159159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+W+KYGqK+vk++ +prsYYrCt+++C+vkk+v+r a+dpkvv++tYeg Hnh+
  XP_013610676.1 101 LDDGYRWKKYGQKSVKNNAHPRSYYRCTYHTCNVKKQVQRLAKDPKVVVTTYEGVHNHP 159
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-3288159IPR003657WRKY domain
SuperFamilySSF1182906.8E-2893160IPR003657WRKY domain
PROSITE profilePS5081129.28796161IPR003657WRKY domain
SMARTSM007746.3E-37101160IPR003657WRKY domain
PfamPF031061.5E-25102159IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MEGIDNTHSM LTLEEGENNP FSSFDDKQLV PSLMFSGDMG TSSCSPASFH MSSQPENFQG  60
GRGGEPMEMG GLNDHNNKGK GKISSALQRI AFHTRSDDDV LDDGYRWKKY GQKSVKNNAH  120
PRSYYRCTYH TCNVKKQVQR LAKDPKVVVT TYEGVHNHPC EKLMETLSPL LRQLQFLTRV  180
SDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2691158774Probable WRKY transcription factor 4
2lex_A2e-2691158774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013610676.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300630.0KF430063.1 Brassica rapa WRKY transcription factor 56 (WRKY56) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610676.11e-137PREDICTED: probable WRKY transcription factor 56
SwissprotQ8VWQ42e-97WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBLA0A0D3E4E91e-136A0A0D3E4E9_BRAOL; Uncharacterized protein
TrEMBLA0A3P6E4Z41e-136A0A3P6E4Z4_BRAOL; Uncharacterized protein
STRINGBo9g033920.11e-137(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50928154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.11e-100WRKY DNA-binding protein 56