PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013610796.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 259aa MW: 28646.4 Da PI: 4.4031

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013610796.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00072	65	87	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C C+k++s++ +L H+++H XP_013610796.1 65 FICRFCNKRCSSSQSLGGHMNSH 87 89*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.34E-5	59	97	No hit	No description
PROSITE profile	PS50157	8.829	65	92	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	67	87	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MSSASSSLAQ LKTCNDINVA VEESKETATE NNNPGLGSDS QEVVTERRSE NPSLGSGAVP 60 TGNGFICRFC NKRCSSSQSL GGHMNSHKRE LQWERKQKEN EQQFHRQWIL SQYSQGALSN 120 DNNLGNTSEP FKRICTGLYP SFNSGLMDMN MTVVPRMAPT GFFSGNTFTN GSFSGGLEPI 180 PSYNNYPPML PRNVPPFPPH RTTNLPSYWY PQENVLNEED VILKLGNDNI VEIDDDDDDD 240 AVDQPEEGPS KSWGADLSL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013610796.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013610796.1	0.0	PREDICTED: zinc finger protein STAMENLESS 1-like
TrEMBL	A0A0D3E151	0.0	A0A0D3E151_BRAOL; Uncharacterized protein
STRING	Bo9g010560.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6363	18	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27880.1	8e-68	C2H2 family protein