PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013610837.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 233aa MW: 27441.3 Da PI: 8.4199

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013610837.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	79.8	2.8e-25	121	171	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++l++++kyF+ pi +AAkeL+v+lTvLK++CR++ I RWPhRk+ksl XP_013610837.1 121 QDKLELSEIRKYFDRPIMKAAKELNVGLTVLKKRCRELEIFRWPHRKLKSL 171 6799*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.063	108	193	IPR003035	RWP-RK domain
Pfam	PF02042	3.1E-21	124	171	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MDPKFLQPLD SMKIENQYET DSLFDMLEKL PPLESLLDTE YLRPDPGLHF EYQYNSFEDF 60 FENIEVNNNT ISSDILMLTQ EPYFSSDSSS PLVVQNNHCP STNERREKKA PKKRNTRAKR 120 QDKLELSEIR KYFDRPIMKA AKELNVGLTV LKKRCRELEI FRWPHRKLKS LNSLISNLKG 180 VGMDQEVKNL EEHRVLIEQE PDAELTDGTK KLRQACFKAK YKRKKSLAND GYY

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013610837.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013610837.1	1e-172	PREDICTED: protein RKD4
Swissprot	Q9LVU8	1e-108	RKD4_ARATH; Protein RKD4
TrEMBL	A0A0D3EAI4	1e-171	A0A0D3EAI4_BRAOL; Uncharacterized protein
STRING	Bo9g108730.1	1e-172	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12585	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	1e-100	RWP-RK domain-containing protein

Publications ? help Back to Top
Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER Gene regulatory network models for floral organ determination. Methods Mol. Biol., 2014. 1110: p. 441-69 [PMID:24395275]