PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013611019.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 246aa    MW: 28248.7 Da    PI: 7.4296
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013611019.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-0798117626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     C+ f+  G C++Gd+C FaHg
  XP_013611019.1  98 CPAFRN-GACHRGDTCEFAHG 117
                     666666.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.26792119IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-492118IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-697117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-598120IPR000571Zinc finger, CCCH-type
SMARTSM0035619127150IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MLKSVNPMTF YGIGEQQFPT LGYIVSKPGN AGAYEIDPPL PTVNDVIYSS DEFRMYAYKI  60
KRCPRTRSHD WTECPYAHRG EKATRRDPRR YSYCAVACPA FRNGACHRGD TCEFAHGVFE  120
YWLHPARYRT RACNAGNMCQ RKVCFFAHAP EQLRQSEGKH RCRYAYRPVR TTVARGRNGD  180
GVGIREDGED FDTWQSPVKS GESELDINEE RLLKCWSGMS IVDDHYDPSD LDLNLSHIDW  240
ISALVD
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in embryo (at protein level). {ECO:0000269|PubMed:9501112}.
Functional Description ? help Back to Top
Source Description
UniProtEmbryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013611019.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3507100.0AY350710.1 Brassica oleracea clone BAC Bo37N21, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013611019.10.0PREDICTED: zinc finger CCCH domain-containing protein 54
RefseqXP_013734961.10.0zinc finger CCCH domain-containing protein 54
SwissprotO650361e-153C3H54_ARATH; Zinc finger CCCH domain-containing protein 54
TrEMBLA0A078JEY60.0A0A078JEY6_BRANA; BnaC09g47920D protein
TrEMBLA0A0D3EH600.0A0A0D3EH60_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DS010.0A0A3P6DS01_BRAOL; Uncharacterized protein
STRINGBo9g175550.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115272126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.11e-155C3H family protein