PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013611633.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 252aa    MW: 29088.9 Da    PI: 8.073
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013611633.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix445.6e-1433114286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     Wt++ + +L++a   +  rl  g+l++++W+ev++++   +  g  ++ +qCk++++ l+k+yk++k+  +       s +++fd+l+
  XP_013611633.1  33 WTEDATATLLQAWGHRFVRLDFGNLRQNDWKEVADAVnssHGSGRPKTDTQCKSRIDTLKKKYKAEKAKLSP------SAWRFFDRLD 114
                     *************************************9555555677********************99986......57*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.5E-2431115No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
METTTPPPPP AKPQQPHSTV SHRQRTAGRE DWWTEDATAT LLQAWGHRFV RLDFGNLRQN  60
DWKEVADAVN SSHGSGRPKT DTQCKSRIDT LKKKYKAEKA KLSPSAWRFF DRLDVLIGPV  120
SKKPAEEVVK SEALKPYLSL TGTKYRESSL EDDDEEEEDG DWGFVTRKHP RVEEGDLSEE  180
TACKELARTI VKLGEVYERI EGRKQKMMVD LEKQRMEVVK EIELQRMNML MEMQLELEKS  240
KNRKRGDCSG KK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013611633.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892010.0AC189201.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005N03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013611633.10.0PREDICTED: trihelix transcription factor ASIL2
RefseqXP_013737866.10.0trihelix transcription factor ASIL2-like
TrEMBLA0A0D3EHL10.0A0A0D3EHL1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EDP80.0A0A3P6EDP8_BRAOL; Uncharacterized protein
STRINGBo9g177060.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.14e-88sequence-specific DNA binding transcription factors