PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013611856.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 356aa    MW: 38636.5 Da    PI: 7.0356
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013611856.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.56.2e-23238300163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     eke+kre+rkq+NRe+ArrsR+RK+ae+eeL  kv++L aeN++L+++l +l++e++kl+ e+
  XP_013611856.1 238 EKEVKREKRKQSNRESARRSRLRKQAETEELSVKVDALVAENMTLRSKLGQLNDESEKLRLEN 300
                     89*********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.3E-24187IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.4E-13122197No hitNo description
Gene3DG3DSA:1.20.5.1703.4E-16233297No hitNo description
PfamPF001701.0E-21238300IPR004827Basic-leucine zipper domain
SMARTSM003388.5E-20238302IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.76240303IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.06E-10241297No hitNo description
CDDcd147026.00E-20243292No hitNo description
PROSITE patternPS000360245260IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MGSNEEGKTT QSDKPAQEQS NVHVYHHDWA AMQAYYGPRV AITPQYYNSN GHAPPYIWGS  60
PSPMMAPYGT PYPPFCPPGG VYAHPALQMG TQPQGAVSQA TPVVATPLNL EAHPANSSGN  120
TDQGFMKKLK EFDGLAMSIS NNKTGSAEHS SEPKNSQSSE NDDSSNGSDG NATGGEQSRK  180
KRSREGSPNN DGKPSSQIVP LLRDENEKQA VTMGTPVMPT VLDFPQPRHG APHEVWNEKE  240
VKREKRKQSN RESARRSRLR KQAETEELSV KVDALVAENM TLRSKLGQLN DESEKLRLEN  300
QALLDQLKAQ ATGKTENLIS GVDKNNNSVS GSSSSSKNAE QQLLNVSLRT DSVAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254260RRSRLRK
2254261RRSRLRKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Found in both light and dark grown leaves. {ECO:0000269|PubMed:1373374}.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. GBF2 is found to bind asymmetrically to the G-box. {ECO:0000269|PubMed:1373374}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013611856.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX839200.0X83920.1 B.napus mRNA for G-Box binding factor 2A.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013611856.10.0PREDICTED: G-box-binding factor 2 isoform X3
SwissprotP427751e-168GBF2_ARATH; G-box-binding factor 2
TrEMBLA0A0D3DZR30.0A0A0D3DZR3_BRAOL; Uncharacterized protein
STRINGBo9g003700.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01120.11e-132G-box binding factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li B, et al.
    Promoter-based integration in plant defense regulation.
    Plant Physiol., 2014. 166(4): p. 1803-20
    [PMID:25352272]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]