PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013612495.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 559aa    MW: 61796.6 Da    PI: 6.2926
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013612495.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS307.43.2e-941965562374
            GRAS   2 velLlecAeavss.gdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     +e+Ll++Ae+++  g+++ aq +Larl+++ +sp g++++R+a+y+ eAL++ l++      +  ++s+ ++++ + +++a+k fse+sP+l+f+
  XP_013612495.1 196 TEQLLKVAEVMERgGETSVAQGILARLNQQlSSPVGKAFERAAFYYIEALHNSLLH------NNKASSPLNPYSLIFKISAYKSFSEISPVLQFA 284
                     689********9967899**********998************************9......5566777778889******************** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpegpp..slRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvl 181
                     ++t Nqa+le+++g +r+HiiDfdi++G++W++L+q+L   R +++p  sl+iT+++sp+++     ++ el  t+++L++fA+e++++++++vl
  XP_013612495.1 285 NFTSNQALLESFHGFNRLHIIDFDIGYGGHWASLMQELVlLRHNDAPplSLKITVFASPDHHhhqhqQRLELAFTQDNLKHFASEINISLDIQVL 379
                     ***************************************7787544437**********99999988899999*********************8 PP

            GRAS 182 vakrledleleeL...rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.adhnsesFlerflealeyysalfdsle 272
                        +l+ l   +L   + +++Ea+aVnl+ + ++          + + +L++vk+lsP+++v++++  +++++ +F +++l++l+ ++al++sl+
  XP_013612495.1 380 ---SLDLL--ASLswpSSDKEEAVAVNLSPASFSNT--------PSSLLLRFVKHLSPTIIVCSDRGgCERTDLPFPQQLLHSLHSHAALLESLD 461
                     ...55555..3441115566*********9777665........34689*****************97899***********************8 PP

            GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                     a   ++ ++++k+Er+l+++ei+++v    ++       +++W+++++++GF+pv+ s+++++qa++l+++++++g++ve++++sl+l+W++ +L
  XP_013612495.1 462 AV-NANLDAMHKIERFLIQPEIEKLVLLDRSR------PMMTWQAMFMQMGFSPVTHSNFTESQAECLVQRTPVRGFHVEKKHNSLLLCWQRTEL 549
                     87.5677*******************998776......99******************************************************* PP

            GRAS 368 vsvSaWr 374
                     v vSaWr
  XP_013612495.1 550 VGVSAWR 556
                     ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.629170536IPR005202Transcription factor GRAS
PfamPF035141.1E-91196556IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MPLPFEEFQG KVISSYFSSD IEPTSVLSPL ATSSSTVSSS HGVNAAVGGG GISGGDEQCG  60
ASDWEQVLPA SPTHDHDNDQ SILRLIMMGD SQDPSHELNN ILQTSQSPAT FHHSDYTSLG  120
SFGVVDDTTT TGFGGLDHSV PPLFQSQVPP QHPLLINQSQ THFTQNPSLF YGHHQHQIPA  180
AKRLNQGGSV GEGMITEQLL KVAEVMERGG ETSVAQGILA RLNQQLSSPV GKAFERAAFY  240
YIEALHNSLL HNNKASSPLN PYSLIFKISA YKSFSEISPV LQFANFTSNQ ALLESFHGFN  300
RLHIIDFDIG YGGHWASLMQ ELVLLRHNDA PPLSLKITVF ASPDHHHHQH QQRLELAFTQ  360
DNLKHFASEI NISLDIQVLS LDLLASLSWP SSDKEEAVAV NLSPASFSNT PSSLLLRFVK  420
HLSPTIIVCS DRGGCERTDL PFPQQLLHSL HSHAALLESL DAVNANLDAM HKIERFLIQP  480
EIEKLVLLDR SRPMMTWQAM FMQMGFSPVT HSNFTESQAE CLVQRTPVRG FHVEKKHNSL  540
LLCWQRTELV GVSAWRYRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-2522755633375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013612495.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013612495.10.0PREDICTED: scarecrow-like protein 6
SwissprotO813160.0SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A0D3DZK30.0A0A0D3DZK3_BRAOL; Uncharacterized protein
STRINGBo9g001120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85742739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.10.0GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]