PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013612535.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 212aa    MW: 23509.6 Da    PI: 3.9081
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013612535.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.34.8e-121498187
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgr 87
                    ffkv +p d++    l +p +f +   ++k+ +  +++++  g+ W++kl  rk+ g     + + +GWk+ vk+ +Lk g+f+ F++d  
  XP_013612535.1 14 FFKVYLPDDSGD--DLDIPISFNSF--LPKPLPEYIIVRSIYGNIWKLKL--RKHCGDdvdkVSMLNGWKRIVKDEDLKGGEFLAFEFDCY 98
                    788886666554..59******743..56779999***************..777777777866777********************8764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.47E-177110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-147108IPR015300DNA-binding pseudobarrel domain
CDDcd100173.56E-1412106No hitNo description
PROSITE profilePS5086310.78512109IPR003340B3 DNA binding domain
SMARTSM010192.5E-1214109IPR003340B3 DNA binding domain
PfamPF023621.6E-91496IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MNKGDSSDDC LPKFFKVYLP DDSGDDLDIP ISFNSFLPKP LPEYIIVRSI YGNIWKLKLR  60
KHCGDDVDKV SMLNGWKRIV KDEDLKGGEF LAFEFDCYRL FNFCIYGQAT CKRLGSSVKT  120
KEITDESEGE DGKSGVDVIV IDDDSTDDDD DDDSVSSGQG SGMEDQSTKD IIVIDEDTTD  180
DDDDETRSGV ETEIIEKGSS EVSTKSDSGE GE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A5e-1341111104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013612535.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013612535.11e-148PREDICTED: B3 domain-containing protein At5g60142-like
SwissprotQ9LST36e-60Y5142_ARATH; B3 domain-containing protein At5g60142
TrEMBLA0A0D3ECZ71e-147A0A0D3ECZ7_BRAOL; Uncharacterized protein
STRINGBo9g141120.11e-148(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60142.14e-61B3 family protein