PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013612937.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 455aa    MW: 51247.1 Da    PI: 6.1362
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013612937.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.61.3e-4991371128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp+GfrF+Ptdeelv +yL++k++g++ ++ +vi+ vd++k+ePwdLp  + v++ ++ew fF++ d+ky++g+r nrat +gyWkatgkd++v+
  XP_013612937.1   9 LPVGFRFSPTDEELVRYYLRQKINGRDDDV-RVIRAVDMCKYEPWDLPdlSVVRTMDSEWLFFCPLDRKYPSGSRMNRATIAGYWKATGKDRKVK 102
                     79*************************999.99**************96447778899************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     s +++ +g+k+tLvfy+grapkg++t W+mheyr+
  XP_013612937.1 103 SGSTKIIGVKRTLVFYTGRAPKGTRTCWIMHEYRA 137
                     *99999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-556160IPR003441NAC domain
PROSITE profilePS5100554.6519160IPR003441NAC domain
PfamPF023651.9E-2510136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002230Biological Processpositive regulation of defense response to virus by host
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MEVLSLDALP VGFRFSPTDE ELVRYYLRQK INGRDDDVRV IRAVDMCKYE PWDLPDLSVV  60
RTMDSEWLFF CPLDRKYPSG SRMNRATIAG YWKATGKDRK VKSGSTKIIG VKRTLVFYTG  120
RAPKGTRTCW IMHEYRATEK DLDGTKPGQN PFVICKLFKK QDVVSEASPE CGVEPAVSSP  180
TVVDEVRSEV ELSEVSLAFP TKEEPKHSTD VAESSLVVYG ECQSDISAPE VTTTELDHID  240
WRSYLEFESL DHTMFSPLHS QVQSELGSAF NGFQYGSNEP FRNQNDPHIQ TQYGSNDPDQ  300
YMFDLLDLTF QIPYELPEMK HLAQPMPEQI LYEPQSLVNT SNKINNDVSE TGIKIRTRRA  360
QAQGCAEQSV MQGNASRRLL LQVNHNSPKP DTDSIKKEVK ETTKGCGSFM RSKSSSEFIL  420
KKVAAMGCSY RGLLKAGVVA VVFAMSVCSL TGQFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-44416112166NO APICAL MERISTEM PROTEIN
1ut4_B3e-44416112166NO APICAL MERISTEM PROTEIN
1ut7_A3e-44416112166NO APICAL MERISTEM PROTEIN
1ut7_B3e-44416112166NO APICAL MERISTEM PROTEIN
4dul_A3e-44416112166NAC domain-containing protein 19
4dul_B3e-44416112166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator essential for the anti-viral defense called virus basal resistance response pathway (PubMed:11041886, PubMed:15629774, PubMed:18785827, PubMed:24418554). Not involved in HRT-mediated hypersensitive response (HR) and resistance to TCV (PubMed:18785827). Binds DNA non specifically (PubMed:15629774). Activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). {ECO:0000250|UniProtKB:Q9SCK6, ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774, ECO:0000269|PubMed:18785827, ECO:0000269|PubMed:24418554}.; FUNCTION: (Microbial infection) Compromised function in defense response pathway when interacting with the invading viral capsid protein (CP) of turnip crinkle virus (TCV) due to abnormal subcellular localization. {ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013612937.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by bacterial pathogens type III effector proteins (TTEs). {ECO:0000269|PubMed:16553893}.; INDUCTION: (Microbial infection) Accumulates 2 days post infection with turnip crinkle virus (TCV) (PubMed:24418554). {ECO:0000269|PubMed:24418554}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4204400.0KJ420440.1 Brassica napus NAC transcription factor 91-1 (NAC91-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013612937.10.0PREDICTED: NAC domain-containing protein 62-like isoform X2
SwissprotQ9LKG80.0NAC91_ARATH; NAC domain-containing protein 91
TrEMBLA0A0D3E1F50.0A0A0D3E1F5_BRAOL; Uncharacterized protein
STRINGBo9g012590.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.20.0TCV-interacting protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ben Daniel BH, et al.
    Identification of novel transcriptional regulators of Zat12 using comprehensive yeast one-hybrid screens.
    Physiol Plant, 2016. 157(4): p. 422-41
    [PMID:26923089]
  3. Li Y, et al.
    The interaction between Turnip crinkle virus p38 and Cucumber mosaic virus 2b and its critical domains.
    Virus Res., 2016. 222: p. 94-105
    [PMID:27288723]