PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013613548.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 411aa    MW: 45692.7 Da    PI: 7.6564
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013613548.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.78.4e-074985337
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..H 37
                     r+C+++++++++  C++++  lC +C    H +  H
  XP_013613548.1 49 SRICDNCGSEPVSVRCFTDDLVLCLECDWDVHGScsH 85
                    689************************9888843556 PP
2CCT65.51.5e-22363406144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R +a++RYkeKrk+R+++K+irYesRKa+A++R RvKGrFvk++
  XP_013613548.1 363 RGNAMQRYKEKRKNRRYDKTIRYESRKARADTRLRVKGRFVKAT 406
                     7789**************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.229451IPR000315B-box-type zinc finger
SMARTSM003363.6E-11451IPR000315B-box-type zinc finger
CDDcd000213.48E-7851No hitNo description
CDDcd000213.97E-85080No hitNo description
SMARTSM003360.675290IPR000315B-box-type zinc finger
PfamPF062035.0E-17363405IPR010402CCT domain
PROSITE profilePS5101714.942363405IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MNSSERAPCD FCGERTAFLF CRADAAKLCL PCDHRVHKAN LLSRKHVRSR ICDNCGSEPV  60
SVRCFTDDLV LCLECDWDVH GSCSHVRSAA EGFSGCPSAL ELAALLGADL EGRKEEKEVP  120
TMMMMMMTME SFGMELDSWV SGSNVLQIVP VTSDTTTFKK RSSSCGRYKQ VLCKQLEEML  180
KGEDNDGDGG GEAKEGIMVP VMPERLGWAR DSYESEVIHQ PPTTSFSSLM WNAANPSGGQ  240
STQIWDFNLE QSREPQDTIR TEAAACVTKD AASFKVNSIV KLLNDACSTK AKRVKEIFQD  300
DYKRLASGQV PATSENNNNL PITFGSNTSN ELCFTENTGG TSCNKATRVV ATKADLEQLA  360
QNRGNAMQRY KEKRKNRRYD KTIRYESRKA RADTRLRVKG RFVKATEAPY P
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.116401e-70leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013613548.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891943e-62AC189194.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB003O07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013613548.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 15-like
SwissprotQ9C7E80.0COL15_ARATH; Zinc finger protein CONSTANS-LIKE 15
TrEMBLA0A0D2ZPW10.0A0A0D2ZPW1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FLV10.0A0A3P6FLV1_BRAOL; Uncharacterized protein
STRINGBo00579s080.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38712647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.11e-174B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]