PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013613610.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ZF-HD
Protein Properties Length: 254aa    MW: 27907.3 Da    PI: 6.6715
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013613610.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.42.6e-3166119357
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                     ++r++eClkN+A+++GghavDGCgE+mp+ g egt++alkCaACgCHRnFHR+e 
  XP_013613610.1  66 RFRFRECLKNQAVNIGGHAVDGCGEYMPA-GIEGTIEALKCAACGCHRNFHRKEL 119
                     689*************************9.999********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.8E-2867118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.7E-2868118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.95869118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-2471119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.3E-29163234IPR009057Homeodomain-like
SuperFamilySSF466892.42E-17166233IPR009057Homeodomain-like
TIGRFAMsTIGR015651.5E-26175231IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0010431Biological Processseed maturation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDFEEEINLH EEEEEGDALY DSPPLPPPSR VLKASTESPD TAGTTSTGEG GYMVAHGGSS  60
LGGGGRFRFR ECLKNQAVNI GGHAVDGCGE YMPAGIEGTI EALKCAACGC HRNFHRKELP  120
YFHHLAPPTP PGAYRLPAPM SYRPSPSQAS PVQLALPPPA EDRMETSSAE AGGMRKRFRT  180
KFTAEQKERM LGLAERIGWR IQRQDDEVIQ RFCQETGVPR QVLKVWLHNN KHTRGMSSSS  240
PLDQHQNPTL PPPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A3e-341742331675ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00588DAPTransfer from AT5G65410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013613610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2409370.0AC240937.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrF101J16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013613610.10.0PREDICTED: zinc-finger homeodomain protein 1-like isoform X3
SwissprotQ9FKP81e-109ZHD1_ARATH; Zinc-finger homeodomain protein 1
TrEMBLA0A0D2ZQ320.0A0A0D2ZQ32_BRAOL; Uncharacterized protein
STRINGBo00615s040.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65410.12e-96homeobox protein 25
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]