PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013613647.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 179aa    MW: 21005.4 Da    PI: 6.681
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013613647.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.13.7e-1386144563
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     +++rr+ +NRe+ArrsR RK+  ++eL   v  L +eN  L+++l++ +++ +++ +e+
  XP_013613647.1  86 RKQRRMLSNRESARRSRMRKQRHLDELWSQVIRLRNENNCLIDKLNRVSETQDSVLKEN 144
                     79************************************************999888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.0E-1482146IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.79584147IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.11E-1286135No hitNo description
PfamPF001704.8E-1186144IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.7E-1086135No hitNo description
CDDcd147024.20E-1887135No hitNo description
PROSITE patternPS00036089104IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MIPAEITGYY QYLSPENLAT LPAEFNIINM PSSPTSSYSL TYLNDLINNN YSSSFIRQDL  60
MMSNNSTSDE DPQHHHHQSI IIVDERKQRR MLSNRESARR SRMRKQRHLD ELWSQVIRLR  120
NENNCLIDKL NRVSETQDSV LKENSKLKEE ASELRQLVCE LKSNKNSDDD NNFVRKLSE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198105RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00262DAPTransfer from AT2G04038Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013613647.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013613647.11e-128PREDICTED: basic leucine zipper 43
SwissprotQ9FMC24e-31BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A0D3AVT91e-127A0A0D3AVT9_BRAOL; Uncharacterized protein
STRINGBo2g138370.11e-128(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28922469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04038.14e-70basic leucine-zipper 48
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]