PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013613874.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 228aa MW: 25731.2 Da PI: 6.7875

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013613874.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.5	1.8e-11	72	117	5	53
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 + rE++RRd++N++f eL ++l + +++K +K++i A++ +++ XP_013613874.1 72 KVCREKQRRDKLNDKFTELSSILEPG---RAPKTDKVAIINDAIRMVNQ 117 5689*******************9...9************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.786	67	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.15E-8	70	123	No hit	No description
SuperFamily	SSF47459	8.64E-13	70	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.5E-9	72	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-7	73	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-12	73	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MVFPENTNWL SDYPLIDGVF SHHSPIFPWQ IDGSATVTVE EVDGFLCDSD VIKERGSKKS 60 VKSESYAGPS SKVCREKQRR DKLNDKFTEL SSILEPGRAP KTDKVAIIND AIRMVNQARD 120 EAQRLKDLNS SLQEKIKELK DEKNELRDEK QKLKIEKDRI EQQLKAINTQ PLPAQPCFLP 180 NPPTLSQAQA PGSKLVPYTT YPGFAMWQFM PPAAVDTSQD HVLRPPVA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013613874.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353406	0.0	AK353406.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-30-I24.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013608909.1	1e-169	PREDICTED: transcription factor bHLH115
Refseq	XP_013613874.1	1e-169	PREDICTED: transcription factor bHLH115
Swissprot	Q9C682	1e-142	BH115_ARATH; Transcription factor bHLH115
TrEMBL	A0A0D3ACN3	1e-168	A0A0D3ACN3_BRAOL; Uncharacterized protein
STRING	Bo00779s020.1	1e-169	(Brassica oleracea)
STRING	Bo1g118840.1	1e-169	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1437	28	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51070.1	1e-145	bHLH family protein

Publications ? help Back to Top
Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511]