PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013614047.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 417aa    MW: 47376.2 Da    PI: 6.0199
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013614047.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM131.65.8e-4161373128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     +G+rF+Pt eel+++yLk+k+ gk+  ++++i+ev+i+++ePw Lp +   k+++++  wyfFs+++ ++a+++ ++r+t sgyWkatg d++++
  XP_013614047.1   6 VGYRFSPTGEELINHYLKNKILGKSWLVDHAISEVNICRYEPWFLPfAalsKLESKDLVWYFFSPKEYTSAKKNVTKRTTPSGYWKATGVDRKIK 100
                     7************************999889***************546666667777************************************9 PP

             NAM  94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +   +g ++g+kktLv+y+gr p+g+ t Wv+hey++
  XP_013614047.1 101 DWrgNGVEIGIKKTLVYYEGRVPNGVWTPWVLHEYHI 137
                     98777888***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100544.7494155IPR003441NAC domain
SuperFamilySSF1019415.36E-454155IPR003441NAC domain
PfamPF023651.4E-226137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MENNLVGYRF SPTGEELINH YLKNKILGKS WLVDHAISEV NICRYEPWFL PFAALSKLES  60
KDLVWYFFSP KEYTSAKKNV TKRTTPSGYW KATGVDRKIK DWRGNGVEIG IKKTLVYYEG  120
RVPNGVWTPW VLHEYHITSL PLNQRTYVIC QVMYKGDDGD SLYGNNSNEP SSSMVSDSNP  180
VKFINTSPEV VQKGQEDGMS MYDLLIPLNQ QVDLSPYDVF NPNKSFTDNS YYPQTPYGDD  240
YWNRLLDYNG GNFEDVFRNQ ELTIQENQSN HRPKRPLTGI IVDDSCSDSD AESISATSYR  300
GTSSPGDSDG SVDEILSLMK GSSKDILTSI NGNTRESRFT RRTIPSKQEV KEGKSKANDD  360
DASMDKKALS PIMKTEKKGW FITEEAIQRN HKNAPYIYFM NMIIGLILLV AVIGNII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-25713718140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00426DAPTransfer from AT4G01550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013614047.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614047.10.0PREDICTED: NAC domain-containing protein 69-like isoform X1
SwissprotQ9M1261e-165NAC69_ARATH; NAC domain-containing protein 69
TrEMBLA0A0D2ZRM60.0A0A0D2ZRM6_BRAOL; Uncharacterized protein
STRINGBo00853s060.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.11e-159NAC domain containing protein 69
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. He L, et al.
    Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance.
    Plant Mol. Biol., 2017. 93(4-5): p. 369-387
    [PMID:27975189]