PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013614048.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 415aa    MW: 47174 Da    PI: 6.0199
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013614048.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM132.43.1e-4161353128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     +G+rF+Pt eel+++yLk+k+ gk+  ++++i+ev+i+++ePw Lp  +k+++++  wyfFs+++ ++a+++ ++r+t sgyWkatg d+++++ 
  XP_013614048.1   6 VGYRFSPTGEELINHYLKNKILGKSWLVDHAISEVNICRYEPWFLPslSKLESKDLVWYFFSPKEYTSAKKNVTKRTTPSGYWKATGVDRKIKDW 100
                     7************************999889***************5447777888************************************998 PP

             NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +g ++g+kktLv+y+gr p+g+ t Wv+hey++
  XP_013614048.1 101 rgNGVEIGIKKTLVYYEGRVPNGVWTPWVLHEYHI 135
                     777888***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-464153IPR003441NAC domain
PROSITE profilePS5100545.7754153IPR003441NAC domain
PfamPF023651.2E-226135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MENNLVGYRF SPTGEELINH YLKNKILGKS WLVDHAISEV NICRYEPWFL PSLSKLESKD  60
LVWYFFSPKE YTSAKKNVTK RTTPSGYWKA TGVDRKIKDW RGNGVEIGIK KTLVYYEGRV  120
PNGVWTPWVL HEYHITSLPL NQRTYVICQV MYKGDDGDSL YGNNSNEPSS SMVSDSNPVK  180
FINTSPEVVQ KGQEDGMSMY DLLIPLNQQV DLSPYDVFNP NKSFTDNSYY PQTPYGDDYW  240
NRLLDYNGGN FEDVFRNQEL TIQENQSNHR PKRPLTGIIV DDSCSDSDAE SISATSYRGT  300
SSPGDSDGSV DEILSLMKGS SKDILTSING NTRESRFTRR TIPSKQEVKE GKSKANDDDA  360
SMDKKALSPI MKTEKKGWFI TEEAIQRNHK NAPYIYFMNM IIGLILLVAV IGNII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-25713518140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00426DAPTransfer from AT4G01550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013614048.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614048.10.0PREDICTED: NAC domain-containing protein 69-like isoform X2
SwissprotQ9M1261e-167NAC69_ARATH; NAC domain-containing protein 69
TrEMBLA0A0D2ZRM60.0A0A0D2ZRM6_BRAOL; Uncharacterized protein
STRINGBo00853s060.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.11e-161NAC domain containing protein 69
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. He L, et al.
    Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance.
    Plant Mol. Biol., 2017. 93(4-5): p. 369-387
    [PMID:27975189]