PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013614149.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 1235aa    MW: 138379 Da    PI: 4.8853
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013614149.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.26.1e-13124224299
                     EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     +k lt+sd l +  ++  k+ + ++         +  ++  l+lede+g+ W ++++y k s+ y +t+ W+++vk+++L  gDfv ++++++++
  XP_013614149.1 124 EKCLTTSDDLHRLVVTANKDAC-KYfplatvfR-S--TDNFLQLEDEEGKPWMFEFSYLKVSQIYEFTEAWSSYVKEKQLGIGDFVFIQRHRTDS 214
                     5778888888776555555555.6667776532.2..34469***********************************************988899 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l ++++r+
  XP_013614149.1 215 SRLSIGFRRR 224
                     999**99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-16116223IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-10119220IPR015300DNA-binding pseudobarrel domain
CDDcd100172.50E-9122223No hitNo description
SMARTSM010190.0013123225IPR003340B3 DNA binding domain
PfamPF023626.6E-11124225IPR003340B3 DNA binding domain
PROSITE profilePS508639.488161225IPR003340B3 DNA binding domain
SMARTSM002550.0049350487IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015826.5E-18362516IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF522003.27E-11365484IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profilePS501049.204401487IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525401.35E-39525768IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009314.7E-17532731IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3001.5E-6539676IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003641.1E-19542557No hitNo description
PRINTSPR003641.1E-19618632No hitNo description
PRINTSPR003641.1E-19709723No hitNo description
SuperFamilySSF520581.47E-298711093IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.6E-248721091IPR032675Leucine-rich repeat domain, L domain-like
PfamPF077254.6E-10932950IPR011713Leucine-rich repeat 3
PRINTSPR003641.1E-1910221038No hitNo description
PROSITE profilePS5010311.00911011129IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1235 aa     Download sequence    Send to blast
MDEDDKEYWE ELLEFNRQPP PSGSTADDAG EGINAASFKG MDEDDKEYWE ELLEFNRQRP  60
PSGSTADDAG EGINAASFKE MDEDDKENPF SSPLVLNEHL KKTQIGDEKK LNIPAGQQQH  120
NLCEKCLTTS DDLHRLVVTA NKDACKYFPL ATVFRSTDNF LQLEDEEGKP WMFEFSYLKV  180
SQIYEFTEAW SSYVKEKQLG IGDFVFIQRH RTDSSRLSIG FRRRNNSLLY ENPAPLTMSI  240
GDGGSALQSD NFPCHDPAPS TISFMDGDAP LQLTPPFQSD NFPCHDPAPA ALQLDPCQDT  300
FPCHDLAPPT ISFGDGGAAP RDCIYLLPDS VTSSETLEQP RVSGYSITGV DHILVISCGY  360
NQSSEERYFI SYIFNELRLR GFAPLGYDLS RSPVNGNQDL LDKSQLGIII FSMNYVSSRE  420
CMDGFVALMD HSKANELMLF PVFFEVEFCN VKDQAGSFEK AFAQFENSVQ ASQVLKWKAA  480
VKELTSTDRY HQYKKGDEVM LAKNIVRDVQ VNSKTGSNLT ESLQLSYILS LLNSSQSSAP  540
HIVGLWGMAG IGKTTFSREI FRTQGERYDV CYFLPDFHQL CQTKGLNPLR EEFLSKIFGE  600
EKVFIDPCGT KLSFTRDRFR DKKVLIVLDG VSNARDAEVL VGGFGWFSGG HTIILTSRNR  660
QVLVKCNAKE IYEIKKLSES DSIRLCRQFA TEKNWKVRMS LIEELVNYAS GNPLALRALC  720
SSIQKQCISD EEEHLSILHH HPPIEIRDAF GGIFRELDDN EKNTFLDLAC FFKGENKDHV  780
VNILDGCGFL TDLGISGLID ESLISLVDNR IEMPNIFQDM GRFVVRQEHE EAGKRSRLSD  840
SSDIVDVLTN NSGTEIIEGI FLNASGLKLK LSSNVFEEMD RLRLLKLHYP TSENDCKVSL  900
PEGLLSLPDE LRLLHWERYP LESLPGNFNP ENLVELNMPY SNLTKLWEGT ESLEMLKRII  960
LSHSRQLTDF SWLSMATNLE HIDLEGCTSL VEVNSSSILH HRKLSFLSLK DCSHLRIIPS  1020
TAHLESLEVL NLSGCSELEH LEDFSPNLTK IYLAGTAIKE IPSSIVALTR LVTLDVGNCN  1080
RLQHLPPEIN LKAVVGFTPS QPGQPVCTSY FHTGICSKGP ACSSDHPTLS THKNTSSIAS  1140
ETQVHVELIR ALTHENPSSN NLEEVSTKKP RIHRTTSFVT SGTLDLNQQE IGFSFFNQPE  1200
SSSPLGASLS EFSRGGRSNK VFQIFGVSVI CKPNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-141192244113B3 domain-containing transcription factor NGA1
5os9_B3e-141192244113B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDisease resistance protein that cooperates with RPP2B to confer resistance to Hyaloperonospora parasitica isolate Cala2. {ECO:0000269|PubMed:15165183}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013614149.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614149.10.0PREDICTED: probable WRKY transcription factor 19 isoform X1
SwissprotF4JT780.0RPP2A_ARATH; Disease resistance protein RPP2A
TrEMBLA0A0D2ZRZ90.0A0A0D2ZRZ9_BRAOL; Uncharacterized protein
STRINGBo00889s060.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5462920
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.11e-141WRKY family protein
Publications ? help Back to Top
  1. Meyers BC,Morgante M,Michelmore RW
    TIR-X and TIR-NBS proteins: two new families related to disease resistance TIR-NBS-LRR proteins encoded in Arabidopsis and other plant genomes.
    Plant J., 2002. 32(1): p. 77-92
    [PMID:12366802]
  2. Sinapidou E, et al.
    Two TIR:NB:LRR genes are required to specify resistance to Peronospora parasitica isolate Cala2 in Arabidopsis.
    Plant J., 2004. 38(6): p. 898-909
    [PMID:15165183]
  3. Kempema LA,Cui X,Holzer FM,Walling LL
    Arabidopsis transcriptome changes in response to phloem-feeding silverleaf whitefly nymphs. Similarities and distinctions in responses to aphids.
    Plant Physiol., 2007. 143(2): p. 849-65
    [PMID:17189325]