PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013614237.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 169aa    MW: 19785.6 Da    PI: 5.6054
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013614237.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.63.9e-10119161346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       WT+eE ++l ++++++  + ++ Ia ++++ Rtl+++k+r+++
   XP_013614237.1 119 VWTKEETDQLFELCERFDLR-FTVIADRFPLSRTLEELKDRYYS 161
                      6*******************.*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF162829.8E-2699163IPR032563DAMP1, SANT/Myb-like domain
SuperFamilySSF466892.18E-7116162IPR009057Homeodomain-like
SMARTSM007173.6E-8116165IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-7119162IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MGGTDAKDIL GLPKTPLSLA QEKRSRPQKE SHRKPDGISR EVAWQWLPVK SSARSDDLQL  60
FHWVCSLALE PYYTKVEHLI LSNVMCIVRL EWLMMFHHQS VDVLKYTDDE YENHLTDPVW  120
TKEETDQLFE LCERFDLRFT VIADRFPLSR TLEELKDRYY SVTPGPAAC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hm5_A1e-13981621179DNA methyltransferase 1-associated protein 1
4iej_A1e-13981621179DNA methyltransferase 1-associated protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013614237.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530191e-84AK353019.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-J15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614237.11e-124PREDICTED: SWR1-complex protein 4-like isoform X1
SwissprotQ8VZL69e-67SWC4_ARATH; SWR1-complex protein 4
TrEMBLA0A0D2ZS844e-81A0A0D2ZS84_BRAOL; Uncharacterized protein
STRINGBo00920s020.17e-82(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3136822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47210.14e-69MYB_related family protein
Publications ? help Back to Top
  1. Gómez-Zambrano Á, et al.
    Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes.
    Mol Plant, 2018. 11(6): p. 815-832
    [PMID:29604400]