PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013614310.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 475aa    MW: 51661.2 Da    PI: 6.7982
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013614310.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.45.9e-09300348355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_013614310.1 300 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 348
                     58*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.50E-11295352No hitNo description
SuperFamilySSF474592.49E-17295366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.478297347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-17298365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-6300348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10303353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MDVNEKEEFS GEKRNTSYDS ADNHPSDWRI SGSNPVSAPF GSYSTENLIT ASCSPSQMMD  60
SFGQTLWYDP TNLQAVGYGG FSGGHPSSSS SSCFRGNMDR SLEMGWSMPN LLPPKGNGLF  120
LPNASSFLPP SMAQLPADSG FIERAARFSL FSDMVNQPLA KPESVGLFLE GQCPSTEVNV  180
GVAHNDASTA MKGPNVRSSE QASKPNVSED TQSSGQKGGE TSSKGFDSKK RKRNRQNSEA  240
DQSHKSEEEA ENNGDKKRND EQSPNSPGNK TNSGKQQGKQ TSDPKHGYIH VRARRGQATN  300
SHSLAERVRR EKISERMKFL QDLVPGCNKV TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT  360
VNPQMDFNLE ALLAKDVREL QLRGGSSSAT PFPQNMPMVY PPLPHGFMQQ TLSSIGRNIS  420
SPLSPINGGY KRQETNGWEG DLQNVIHINY GAGDVPSDPA AATASLPSSN MKVEP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013614310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3189370.0AK318937.1 Arabidopsis thaliana AT1G68920 mRNA, complete cds, clone: RAFL22-22-I01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614310.10.0PREDICTED: transcription factor bHLH49 isoform X1
SwissprotQ9CAA90.0BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A0D3AP450.0A0A0D3AP45_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DP750.0A0A3P6DP75_BRAOL; Uncharacterized protein
STRINGBo2g062450.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59002544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.30.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]