PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013614316.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 447aa MW: 48813.2 Da PI: 6.7294

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013614316.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.6	5.4e-09	272	320	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_013614316.1 272 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 320 58***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.36E-17	267	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.09E-11	267	324	No hit	No description
PROSITE profile	PS50888	15.478	269	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.5E-17	270	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.4E-6	272	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	275	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MDVNEKEEFS GEKRNTSYDS ADNHPSDWRI SGSNPVSAPF GSYSTENLIT ASCSPSQMMD 60 SFGQTLWGNM DRSLEMGWSM PNLLPPKGNG LFLPNASSFL PPSMAQLPAD SGFIERAARF 120 SLFSDMVNQP LAKPESVGLF LEGQCPSTEV NVGVAHNDAS TAMKGPNVRS SEQASKPNVS 180 EDTQSSGQKG GETSSKGFDS KKRKRNRQNS EADQSHKSEE EAENNGDKKR NDEQSPNSPG 240 NKTNSGKQQG KQTSDPKHGY IHVRARRGQA TNSHSLAERV RREKISERMK FLQDLVPGCN 300 KVTGKAVMLD EIINYVQSLQ RQVEFLSMKL ATVNPQMDFN LEALLAKDVR ELQLRGGSSS 360 ATPFPQNMPM VYPPLPHGFM QQTLSSIGRN ISSPLSPING GYKRQETNGW EGDLQNVIHI 420 NYGAGDVPSD PAAATASLPS SNMKVEP

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MDVNEKEEFS GEKRNTSYDS ADNHPSDWRI SGSNPVSAPF GSYSTENLIT ASCSPSQMMD  60
SFGQTLWGNM DRSLEMGWSM PNLLPPKGNG LFLPNASSFL PPSMAQLPAD SGFIERAARF  120
SLFSDMVNQP LAKPESVGLF LEGQCPSTEV NVGVAHNDAS TAMKGPNVRS SEQASKPNVS  180
EDTQSSGQKG GETSSKGFDS KKRKRNRQNS EADQSHKSEE EAENNGDKKR NDEQSPNSPG  240
NKTNSGKQQG KQTSDPKHGY IHVRARRGQA TNSHSLAERV RREKISERMK FLQDLVPGCN  300
KVTGKAVMLD EIINYVQSLQ RQVEFLSMKL ATVNPQMDFN LEALLAKDVR ELQLRGGSSS  360
ATPFPQNMPM VYPPLPHGFM QQTLSSIGRN ISSPLSPING GYKRQETNGW EGDLQNVIHI  420
NYGAGDVPSD PAAATASLPS SNMKVEP

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013614316.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK318937	0.0	AK318937.1 Arabidopsis thaliana AT1G68920 mRNA, complete cds, clone: RAFL22-22-I01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013614316.1	0.0	PREDICTED: transcription factor bHLH49 isoform X2
Swissprot	Q9CAA9	0.0	BH049_ARATH; Transcription factor bHLH49
TrEMBL	A0A0D3AP45	0.0	A0A0D3AP45_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6DP75	0.0	A0A3P6DP75_BRAOL; Uncharacterized protein
STRING	Bo2g062450.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]