PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013614535.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 307aa    MW: 32746.9 Da    PI: 6.8038
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013614535.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.5e-09153197554
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L+el+P+ +      K + a++  + v+Y+k L
  XP_013614535.1 153 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 197
                     99***********************55......9**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-14146207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.802148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-14150207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-6153197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-10154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MASNNNPHEN LSDQTPSDDF FDQILGLPNF SASSSDGGLS GGGAPPMMLQ LGSGEEGSHM  60
AGLGGSGPSV FHNQMFPLGL SLNQGKGHVF LRPEGGGVHA SVNRSSSSSS SSSMKGPVFH  120
GQPMQQPAPA APHQPTSIRP RVRARRGQAT DPHSIAERLR RERIAERIRA LQELVPTVNK  180
TDRAAMIDEI VDYVKFLRLQ VKVLSMSRLG GAGAVAPLVT DMPLSSSVED ETSEGGRTPQ  240
PAWEKWSNDG TERQVAKLME ENVGAAMQLL QSKALCMMPI SLAMAIYHSQ PPDTSSVVKP  300
ETNPPPQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162RLRRER
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013614535.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527650.0AK352765.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-G01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614535.10.0PREDICTED: transcription factor UNE12-like
SwissprotO227681e-171UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0D2ZT360.0A0A0D2ZT36_BRAOL; Uncharacterized protein
STRINGBo01031s030.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-149bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]