PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013614548.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 232aa MW: 25411.8 Da PI: 4.7106

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013614548.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.9	7e-43	59	158	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r+da++s+vyeA ar+rdPvyG++g i +lq+q+++l+a+la XP_013614548.1 59 PCAACKILRRRCAEKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLA 153 7********************************************************************************************** PP DUF260 96 llkee 100 +++ e XP_013614548.1 154 KTQVE 158 99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.323	58	159	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.1E-42	59	156	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MLKMEINGST STATPTASAV AVVSASETTT PVSSPSLTSS PPPSLSPQQP PQPPVVLSPC 60 AACKILRRRC AEKCVLAPYF PPTDPAKFTI AHRVFGASNI IKFLQELPES QRTDAVNSMV 120 YEAGARMRDP VYGCAGAIYH LQRQVSELQA QLAKTQVELV SMQLQRSDLL ELFYKMEQTK 180 LSAQGQQNMS FESSFDSGDE FISSPDEVTN DLGFLEDTNN NNSSMSWWVP LW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-41	51	160	3	112	LOB family transfactor Ramosa2.1
5ly0_B	4e-41	51	160	3	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013614548.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473840	0.0	AB473840.1 Arabidopsis thaliana ASL7 mRNA for ASYMMETRIC LEAVES2-like 7 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013614548.1	1e-172	PREDICTED: LOB domain-containing protein 11-like
Refseq	XP_013681453.1	1e-172	LOB domain-containing protein 11-like
Swissprot	Q9SK08	1e-127	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A0D2ZT58	1e-171	A0A0D2ZT58_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6C471	1e-171	A0A3P6C471_BRAOL; Uncharacterized protein
STRING	Bo01039s010.1	1e-172	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	1e-101	LOB domain-containing protein 11