PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013614549.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HB-other

Protein Properties

Length: 103aa MW: 11403.8 Da PI: 7.8722

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013614549.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	25.3	2.6e-08	65	102	2	39
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgL 39 rk+ ++t+eq + Le+ F++n++++ +++e LAk+l L XP_013614549.1 65 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALAKHLML 102 78889******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-8	47	102	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.67E-7	48	102	IPR009057	Homeodomain-like
CDD	cd00086	2.43E-6	64	102	No hit	No description
Pfam	PF00046	1.2E-5	65	102	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence Send to blast
MAILPENSSH LDLTISVPGF SSSRPSVSDE GSGGGREQLK LDMNQLPSSS EDNEELSHGG 60 SAPPRKKLRL TREQSRLLED SFRQNHTLNP KQKEALAKHL MLR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013614549.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353448	1e-102	AK353448.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-26-G16.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013614549.1	3e-68	PREDICTED: homeobox-leucine zipper protein ATHB-17-like, partial
Swissprot	Q8S9N6	4e-53	ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBL	A0A3P6EPP6	2e-65	A0A3P6EPP6_BRAOL; Uncharacterized protein
STRING	Bra024888.1-P	9e-62	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4890	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	2e-55	homeobox-leucine zipper protein 17

Publications ? help Back to Top
Zhao P, et al. ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress. Sci Rep, 2017. 7: p. 45492 [PMID:28358040]