PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013614669.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 563aa    MW: 63678.6 Da    PI: 4.4291
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013614669.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.99.6e-08408451145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r rW+++E + ++++++ +G +  + + + ++k+Rtl q+k+++ 
   XP_013614669.1 408 RTRWSKQETQVFYEGIQAFGIN-LSMVQQFLPKRRTLHQIKLKYK 451
                      78******************99.********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.4E-22401486No hitNo description
Gene3DG3DSA:1.10.10.607.2E-5404451IPR009057Homeodomain-like
SMARTSM007171.1E-5407456IPR001005SANT/Myb domain
SuperFamilySSF466895.15E-7409460IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MGLKGPEPVA RIRARERVTE IVQQEAEIAE LPQSLLLPSN SPFATPSPYG AEEGQGSATI  60
VKAGEIRRWK AEEEGVAYVL HACSKLNSEG QKCDEGTEAE LAFPDDPRRQ DSATFGDFVT  120
SETDEVINAQ TQRMQTEGEV ECHWNMETLD IVQEEGITSA YEEQHSGKFQ PKPRLLDTVI  180
EEEPGSHYSV DDTTGANQSE CMVNEESRND ECTNTAFYGE YQEEEHNIPQ VHKESAPDVL  240
EQEHRVVSPS NNDTVMGQGE TQFNEAETRT DKKGEKKRGR KKKATTNEEE ANKSPGKKKL  300
KHSSRRQKNT LEKELLETPD DDIKHLPIRD MLRLVAYRES LEKKEAKGAP VVPPTQESNN  360
TNASWDNQYY SQGFDAQDEF GMEEGENHVQ VKPDSPVNYQ TYMKKTPRTR WSKQETQVFY  420
EGIQAFGINL SMVQQFLPKR RTLHQIKLKY KLEERKNPLK IDDALSTPCK DLTRYHIVLK  480
KLQQEAAAAK EEEEPGEEAE TTSDVPENEE QTKSDERAGD GVAGVKESDG EDVENGVRSD  540
GGDQFDENEG DDDDFWNSYK SEM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279300RKKKATTNEEEANKSPGKKKLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013614669.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895451e-49AC189545.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004J18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614669.10.0PREDICTED: uncharacterized protein LOC106320864
TrEMBLA0A0D2ZTL20.0A0A0D2ZTL2_BRAOL; Uncharacterized protein
STRINGBo01097s050.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51542535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.11e-140MYB_related family protein