PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013614697.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 584aa    MW: 65375.1 Da    PI: 9.559
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013614697.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.4e-07482531147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
   XP_013614697.1 482 RRPFSVAEVEALVQAVERLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 531
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.864477536IPR017930Myb domain
SMARTSM007177.0E-7481534IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-10482532IPR009057Homeodomain-like
CDDcd116601.67E-16483533No hitNo description
SuperFamilySSF466891.89E-15483564IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MVLQTRLDYG FNGYEVPPTP RAARSPRSAF KKKSENNQIS SSFDLLAAVD GKLLLESGGV  60
SSSSSNNASG DNNEDRCGGK KEPDDQMVVE ETHCDHHHDN NAERSFFVSE ILPKAREMES  120
FNRSPNPNKD FLFGSTSGIT CEYSSEKLGT QELAYEEAKI HNGDCFRSDT NDKKPMLERL  180
NCEPELSKNK DKHHIDLLNG MENNDGRVKK VLSSKYCKVS SNQKDTMVAG SDLDLKPGYY  240
SKKHCLKSLR SEKKYPIKKR RYFDGYTASQ SEETVRNEGL SGSPRKAFLS TIACQKQPAL  300
QSRDSHVKLG IKSFRVPELS IEVPETATIG SLKRTVLEAV TTILEGGLRI GVLVHGKKVR  360
DDNKMLLQTG ISLDTLSDTL SFCLETNPPQ STKPLSPKDS DYMRPCNVPH TLTKCLPTLG  420
KHAKPSDSVE SDLDSKPSSP FRAKPVYSRA LIPVSPPLHA QALNVVPHRK PKRSEVAQRR  480
IRRPFSVAEV EALVQAVERL GTGRWRDVKL RAFDNAKHRT YVDLKDKWKT LVHTARISPQ  540
QRRGEPVPQE LLDRVLMAHA YWSQQQGKQQ LLEGPQKLET SLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-574695714106Telomere binding protein TBP1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}.
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013614697.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614697.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X2
SwissprotQ6R0E30.0TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A0D2ZTQ00.0A0A0D2ZTQ0_BRAOL; Uncharacterized protein
STRINGBo01118s020.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.10.0TRF-like 2