PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013614877.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LSD

Protein Properties

Length: 106aa MW: 10796.7 Da PI: 7.5733

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013614877.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	45.6	1.1e-14	38	62	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP GA+sV+Ca+C++V XP_013614877.1 38 CSGCRNLLMYPVGASSVCCAVCNAV 62 ************************9 PP
2	zf-LSD1	47.5	2.9e-15	77	101	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV XP_013614877.1 77 CGGCHTLLMYIRGATSVQCSCCHTV 101 ************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	2.6E-14	35	65	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	9.5E-12	38	62	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	2.2E-14	75	103	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	7.8E-13	77	101	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence Send to blast
MPVPLAPYPT PPAPALSPSY TPPPLANGST GGQSQLVCSG CRNLLMYPVG ASSVCCAVCN 60 AVTAVPPPGT EMARLVCGGC HTLLMYIRGA TSVQCSCCHT VNLAFE

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269\|PubMed:12732715}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013614877.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB193295	1e-110	AB193295.1 Brassica rapa BrLOL1 mRNA for LSD-One-Like 1, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013614877.1	2e-69	PREDICTED: protein LOL1-like, partial
Swissprot	Q93ZB1	1e-51	LOL1_ARATH; Protein LOL1
TrEMBL	A0A0D2ZUB9	1e-67	A0A0D2ZUB9_BRAOL; Uncharacterized protein
STRING	Bo01229s010.1	2e-68	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7293	26	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	2e-32	lsd one like 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]