PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013614922.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 179aa    MW: 20256 Da    PI: 7.658
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013614922.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.91.5e-103265337
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                      WT++E e++++a +++G + Wk++a+ + ++R+ 
   XP_013614922.1 32 QWTKDELERFYEAYQKHGRD-WKKVAASVENNRSV 65
                     6*****************77.*******9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-62264IPR009057Homeodomain-like
PROSITE profilePS512939.6172886IPR017884SANT domain
SMARTSM007170.00662978IPR001005SANT/Myb domain
SuperFamilySSF466894.71E-93175IPR009057Homeodomain-like
PfamPF002496.6E-93268IPR001005SANT/Myb domain
CDDcd001673.05E-53368No hitNo description
Gene3DG3DSA:3.40.50.6701.3E-10120168IPR013759DNA topoisomerase, type IIA, central domain
SuperFamilySSF567192.54E-10130168IPR013760DNA topoisomerase, type IIA-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006265Biological ProcessDNA topological change
GO:0003677Molecular FunctionDNA binding
GO:0003918Molecular FunctionDNA topoisomerase type II (ATP-hydrolyzing) activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MSGVKNQKPR LYVKFSAPVV KEDCKKKKLG PQWTKDELER FYEAYQKHGR DWKKVAASVE  60
NNRSVDMVEA LFSMNQPYLS LPEASVDGLA AIMTAHYSLF EETESKGEGH DASGVTRGFP  120
IKKLHDAEDL DKQCTLILTE GDSAKHLVMA GLSSLQRKTY GVYPLQGRDE LHYNRFAEI
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269|PubMed:15246533}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013614922.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614922.11e-133PREDICTED: protein ALWAYS EARLY 2-like
SwissprotQ6A3335e-36ALY2_ARATH; Protein ALWAYS EARLY 2
TrEMBLA0A0D2ZUH54e-90A0A0D2ZUH5_BRAOL; DNA topoisomerase 2
STRINGBo01274s020.17e-91(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2125155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.23e-26DNA binding
Publications ? help Back to Top
  1. Pfaff C, et al.
    ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development.
    Plant Physiol., 2018. 177(1): p. 226-240
    [PMID:29540591]