PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013614938.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 322aa    MW: 36103.4 Da    PI: 8.7368
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013614938.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.62.5e-53161421128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+e+d+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++++ 
  XP_013614938.1  16 LPPGFRFHPTDEELVVHYLKKKAASIPLPV-SIIAEIDLYKFDPWELPSKASFGEQEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPIFTC 109
                     79****************************.89***************988899***************************************** PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++++vg+kk Lvfy g+ pkg ktdW+mheyrl
  XP_013614938.1 110 NSHKVGVKKALVFYGGKPPKGIKTDWIMHEYRL 142
                     *******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-649178IPR003441NAC domain
PROSITE profilePS5100560.64716177IPR003441NAC domain
PfamPF023651.3E-2717142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MENMGDSTIG PGHPHLPPGF RFHPTDEELV VHYLKKKAAS IPLPVSIIAE IDLYKFDPWE  60
LPSKASFGEQ EWYFFSPRDR KYPNGVRPNR AATSGYWKAT GTDKPIFTCN SHKVGVKKAL  120
VFYGGKPPKG IKTDWIMHEY RLTDGNLNTA AKPPDSTTSR KNSLRLDDWV LCRIYKKNSS  180
QRPTMERVLL REDLVEGMLS KSSANSSSTS VLDNNNNNNN NEEHFFDGMA VSSDKRSLCG  240
QYRIGHEASG SSSFGSFLSS KRFHHTSDLN NDNYNVSFVS MLSEIPQSSG FHGNGVIDTT  300
STLADHGVLR QAFQLPNMNW HP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-741618020171NAC domain-containing protein 19
3swm_B5e-741618020171NAC domain-containing protein 19
3swm_C5e-741618020171NAC domain-containing protein 19
3swm_D5e-741618020171NAC domain-containing protein 19
3swp_A5e-741618020171NAC domain-containing protein 19
3swp_B5e-741618020171NAC domain-containing protein 19
3swp_C5e-741618020171NAC domain-containing protein 19
3swp_D5e-741618020171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during pollen development and maturation. {ECO:0000269|PubMed:21107887}.
UniprotTISSUE SPECIFICITY: Expressed specifically in the tapetum. {ECO:0000269|PubMed:21107887}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00058PBMTransfer from AT1G61110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013614938.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747590.0KF974759.1 Brassica napus NAC transcription factor 25-1 (NAC25-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614938.10.0PREDICTED: NAC transcription factor 25
SwissprotQ8GY420.0NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A0D2ZUJ00.0A0A0D2ZUJ0_BRAOL; Uncharacterized protein
STRINGBo01282s010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.10.0NAC domain containing protein 25