PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013615227.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 158aa    MW: 18384.9 Da    PI: 8.3537
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013615227.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind49.21.4e-15411278102
                     HHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
    HSF_DNA-bind   8 eiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102
                     ++++d+++++++sws++g+sf+ +d+++f ++vLpk+   ++ + F R  n+Y F+kv+ +e+         e++h++F +gk el  +i+r+ +
  XP_013615227.1  41 RMVDDPSTDSIVSWSQDGSSFIFWDQDKFCSDVLPKFGLSTSPTFFGRLKNIYRFRKVEVSEH--------CEYAHDYFVRGKPELTVEIERQFK 127
                     69**********************************88888888899999*********9995........6*******************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.9E-1333125IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.7E-2041125IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.2E-1641125IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.62E-1541124IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MDSSSSSQGL PVAGRVKEYY RYPALEAFHK GCVRRYFADA RMVDDPSTDS IVSWSQDGSS  60
FIFWDQDKFC SDVLPKFGLS TSPTFFGRLK NIYRFRKVEV SEHCEYAHDY FVRGKPELTV  120
EIERQFKERG APIKLAKLFR FVECLGSIEK CIDIYCRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.12291e-139leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013615227.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013615227.11e-114PREDICTED: heat stress transcription factor A-4a-like
TrEMBLA0A0D2ZVL91e-113A0A0D2ZVL9_BRAOL; Uncharacterized protein
STRINGBo01835s010.11e-114(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.12e-17heat shock factor 1