PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013615275.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 166aa    MW: 19219.1 Da    PI: 8.3052
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013615275.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM34.94.4e-11561262
             NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFs 62
                    p+Gfr +P deel+++y k+++ g++  l++ i+e++iy++eP  Lp+++    ke y F 
  XP_013615275.1  5 PVGFRSSPMDEELINFYQKNRILGNSWLLDDSISEINIYSYEPAFLPEEA----KEDYTFW 61
                    89************************999999***************543....3333332 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-12369IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MKNYPVGFRS SPMDEELINF YQKNRILGNS WLLDDSISEI NIYSYEPAFL PEEAKEDYTF  60
WVLESYDRKI KDKGTLDLLF PRESSPVRDS PNFIPSNPPP PLGRHSSLPR LTVRSAVTSV  120
RSFNPFPSLR NTKVFVFALF LARVWFFPCS CSPLCSMLQF KVFTCL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013615275.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013615275.11e-118PREDICTED: uncharacterized protein LOC106321572 isoform X1
TrEMBLA0A0D3EEG97e-39A0A0D3EEG9_BRAOL; Uncharacterized protein
STRINGBo9g156240.11e-39(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.12e-15NAC domain containing protein 69