PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013615310.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family FAR1
Protein Properties Length: 552aa    MW: 63586.3 Da    PI: 5.7312
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013615310.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.31.7e-20111194290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      Y++Y+ + GF+vr++++ k+  n++ ++  +vCskeg r+e k k   ++  r++tr+gCka++   ++++g++++ ++e++HnH+l+
  XP_013615310.1 111 AYRKYGGNHGFDVRRQRTAKK--NNKLVRMVYVCSKEGLRQEPKVK---KSYARPTTRCGCKARMSCYLQSNGRYKIVTFEQNHNHDLV 194
                     59*************998887..7779**************99877...999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.2E-17111194IPR004330FAR1 DNA binding domain
PfamPF105511.5E-35316410IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MESTHLSGKE IVPANQDKSG LQVSGETSLL SQNSDEFLAE KKDDTFSDDD ALVSDEDASI  60
SDFSEEEDIS NNENYLQIED VDALEANNEN QKKHEFCIGM DFSSDESAYK AYRKYGGNHG  120
FDVRRQRTAK KNNKLVRMVY VCSKEGLRQE PKVKKSYARP TTRCGCKARM SCYLQSNGRY  180
KIVTFEQNHN HDLVRTPMKH LLKSNRAISI SQKQHADDAD MSGISANATV EMMSREVGGR  240
ANLGFMDKDL KNYIYRKRMA AMEKGDAGAV LEYFQKKKED NSSFFYSMQL DEDDMITNIF  300
WADDRSISDY NLFGDVVCFD TTYKTNEFDK PFAPFVGVNH HKQTILFGAA LLYDETTESF  360
EWLFQTFLGA MSGKQPQTIL TDQCAAMANA IGKVFSETKH RLCVWHIYQN AAKRLSHVFH  420
GPDQFASDFG KCVYDHENEV EWLSAWSEML EKYGLTENKW LKNLFELREK WARRGHNLLR  480
FFEHYERVLD DRRFKELTAD FGMMHTSPVL SAPVEMLQHA VDVYTPEVFT LFQKEYTAIG  540
DYVAKRVNKS EM
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013615310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013615310.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like, partial
TrEMBLA0A0D2ZVX20.0A0A0D2ZVX2_BRAOL; Uncharacterized protein
STRINGBo02148s010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-102FAR1-related sequence 5