PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013615677.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 123aa    MW: 14507.6 Da    PI: 10.4084
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013615677.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind80.62.5e-2537125102
                     SSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
    HSF_DNA-bind  25 gnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102
                     g+sfvv+d ++f++ +Lp++Fkhsnf+SF+RQLn+YgF+k++ e+         weF+++ F  g+++ll++ikr++s
  XP_013615677.1   3 GTSFVVWDLHSFSEFLLPRHFKHSNFSSFIRQLNTYGFRKIEAER---------WEFANEGFLLGQRHLLKSIKRRAS 71 
                     79****************************************999.........*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.1E-25169IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.57E-22269IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.4E-24269IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.9E-21369IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-101830IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043401943IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-103143IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
RGGTSFVVWD LHSFSEFLLP RHFKHSNFSS FIRQLNTYGF RKIEAERWEF ANEGFLLGQR  60
HLLKSIKRRA SFALSSSSIQ DPCIELRKEK QLLLMELVSL RQQQETNKSY IKAMEQRIEG  120
AEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-1537143122Heat shock factor protein 1
5d5u_B9e-1537152131Heat shock factor protein 1
5d5v_B9e-1537152131Heat shock factor protein 1
5d5v_D9e-1537152131Heat shock factor protein 1
5hdg_A7e-1537133112Heat shock factor protein 1
5hdn_A7e-1537133112Heat shock factor protein 1
5hdn_B7e-1537133112Heat shock factor protein 1
5hdn_C7e-1537133112Heat shock factor protein 1
5hdn_D7e-1537133112Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16268LKSIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013615677.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0497119e-32AL049711.3 Arabidopsis thaliana DNA chromosome 3, BAC clone F4F15.
GenBankCP0026869e-32CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596160.13e-84PREDICTED: heat stress transcription factor A-7a-like
RefseqXP_013615677.11e-85PREDICTED: heat stress transcription factor A-7a-like, partial
RefseqXP_013737123.13e-84heat stress transcription factor A-7a-like
SwissprotQ9SV121e-68HFA7A_ARATH; Heat stress transcription factor A-7a
TrEMBLA0A3P6E6664e-83A0A3P6E666_BRAOL; Uncharacterized protein
STRINGBo7g101300.11e-83(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.15e-71heat shock transcription factor A7A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]
  3. Nie S,Yue H,Xing D
    A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance.
    Plant Physiol., 2016.
    [PMID:26099269]