PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013615754.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 121aa    MW: 13881.9 Da    PI: 10.6721
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013615754.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48e-111663555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     + +E++RR ++++ ++eL +llP+    + + l   + L +A +YIk+Lq
  XP_013615754.1 16 RKTIEKNRRIQMKNLYSELNSLLPQT---SRESLALPDQLDEAANYIKKLQ 63
                    5789*********************9...8999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.9691162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-91677IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-101678IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00271768IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-71763IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MDQSHLNASQ SRSVDRKTIE KNRRIQMKNL YSELNSLLPQ TSRESLALPD QLDEAANYIK  60
KLQVNVEKKR ERKRKLLATT AFEKLNSTGS SSMSSSVDLS MPRRLPRIEI QETGPVLHIF  120
L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16675EKKRERKRKL
26875KRERKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013615754.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590924.11e-82PREDICTED: transcription factor bHLH36-like
RefseqXP_013615754.16e-83PREDICTED: uncharacterized protein LOC106322156, partial
RefseqXP_013669852.11e-82transcription factor bHLH162-like
SwissprotF4JIJ72e-51BH162_ARATH; Transcription factor bHLH162
TrEMBLA0A0D2ZYB61e-81A0A0D2ZYB6_BRAOL; Uncharacterized protein
TrEMBLA0A0D3A4P63e-81A0A0D3A4P6_BRAOL; Uncharacterized protein
TrEMBLA0A3N6RWG83e-81A0A3N6RWG8_BRACR; Uncharacterized protein
STRINGBo08313s010.12e-82(Brassica oleracea)
STRINGBo1g022660.15e-82(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-45bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]