PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013615815.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 69aa    MW: 7938.19 Da    PI: 10.0296
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013615815.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.76.1e-132365546
                    SHHHHHHHH.HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
          SRF-TF  5 nksnrqvtf.skRrngilKKAeELSvLCdaevaviifsstgkl 46
                    n+++ + +f   R ++ilKKA ELS+LCd +++vi +  +g+l
  XP_013615815.1 23 NQTRFKKSFlLLREKTILKKALELSILCDNDICVIHYDREGNL 65
                    4444444441349************************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554556.67E-101766IPR002100Transcription factor, MADS-box
PfamPF003191.6E-83565IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.3773569IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
MDSLSSSSTS TKMKNNNKLS VRNQTRFKKS FLLLREKTIL KKALELSILC DNDICVIHYD  60
REGNLVNAY
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013615815.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013615815.17e-43PREDICTED: agamous-like MADS-box protein AGL93, partial
SwissprotQ7X9H95e-12AGL93_ARATH; Agamous-like MADS-box protein AGL93
SwissprotQ7X9N25e-12AGL53_ARATH; Agamous-like MADS-box protein AGL53
TrEMBLA0A0D2ZZ471e-41A0A0D2ZZ47_BRAOL; Uncharacterized protein
TrEMBLA0A3P6G4R69e-40A0A3P6G4R6_BRAOL; Uncharacterized protein
STRINGBo11363s010.12e-42(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11759729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27090.26e-14AGAMOUS-like 54
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]