PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013615940.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 276aa    MW: 29118.9 Da    PI: 6.2514
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013615940.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.73.6e-07143169530
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C CS
             HLH   5 hnerErrRRdriNsafeeLrellPk.a 30 
                     h+++Er RR+ri +++  L+el+P+ +
  XP_013615940.1 143 HSIAERLRRERIAERIRALQELVPTvN 169
                     99**********************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-7136173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.623138190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-7140172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-4143169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MAHENLSDQT PSDDFFDQIL GLPSFPASSA AVLSGGLGGG GGAPPMMLQL GSGEEGSGFH  60
SQMFPLGLSL EQGKGPGFRR PEGGGGLGSG KRFSDDVLDH PSSSMKPVFP GQPMQQPAPS  120
APHQPTSIRP RVRARRGQAT DPHSIAERLR RERIAERIRA LQELVPTVNK VLSMSRLGGA  180
GAVAPLVTDM PLSSSVEDEG SEGGRTPQAA WEKWSNDGTE RQVAKLMEEN VGAAMQLLQS  240
KALCMMPISL AMAIYHSQPP DTSSSVVKPE TNPPPP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147152RLRRER
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013615940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2323991e-142AC232399.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH028K09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013615940.10.0PREDICTED: transcription factor UNE12-like isoform X2
SwissprotO227681e-146UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0D3ASF11e-169A0A0D3ASF1_BRAOL; Uncharacterized protein
STRINGBo2g100750.11e-170(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-105bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]