PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013615991.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 281aa    MW: 31563.3 Da    PI: 8.6299
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013615991.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH253.5e-08755254
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    +  +  rE+ RR+++N+ f eL  +l ++     +K++Ka+iL+ + + +k+L
  XP_013615991.1  7 KSQKAGREKLRREKLNEHFVELGNVLDPD----RPKNDKATILTDTLQLLKEL 55
                    5566779******************9997....79***********9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-12571IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.728555IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-12577IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.48E-5659No hitNo description
PfamPF000105.2E-6755IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-61161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDVSARKSQK AGREKLRREK LNEHFVELGN VLDPDRPKND KATILTDTLQ LLKELTSEVN  60
KLKSEYTALT DESRELTQEK NDLREEKTSL KSDIENLNLQ YQQRLRSMSP WGAAMDHTVM  120
MAPPPSFPYP MPMAMPPGSI PMHHPPMPSY TYFGNQNPSM MPAPYMPYMP PNTVVEQQSV  180
HIPQNTRSRE PRAKVSRESR SDKAEDSNDV ATQLELKTPG STSDKDTSQR PEKSKRCKRN  240
SNNNNSVEES SHSSKCSSSP SVRDNTSSSS VAGGLKPDDA K
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013615991.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3175070.0AK317507.1 Arabidopsis thaliana AT3G19860 mRNA, complete cds, clone: RAFL25-09-J11.
GenBankAY0651070.0AY065107.1 Arabidopsis thaliana unknown protein (At3g19860; MPN9.10) mRNA, complete cds.
GenBankAY0817030.0AY081703.1 Arabidopsis thaliana unknown protein (At3g19860) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013615991.10.0PREDICTED: transcription factor bHLH121
RefseqXP_013615996.10.0PREDICTED: transcription factor bHLH121
RefseqXP_013648076.10.0transcription factor bHLH121
SwissprotQ9LT231e-160BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A078H7F90.0A0A078H7F9_BRANA; BnaC01g33010D protein
TrEMBLA0A3P6G3A10.0A0A3P6G3A1_BRAOL; Cytosolic Fe-S cluster assembly factor NBP35
STRINGBo1g112310.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23532762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.11e-132bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]