PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013616215.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 375aa    MW: 41476.4 Da    PI: 8.8392
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013616215.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like75.85.9e-24183235155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k r++W+ eLH++Fv+a+++L G+e ++Pk+ilelm+v++L++e+v+SHLQkYRl
  XP_013616215.1 183 KSRVVWSMELHQQFVKAINHL-GIE-TVPKRILELMNVPSLSRENVASHLQKYRL 235
                     68*******************.777.8***************************8 PP
2Response_reg72.32e-24131211109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+ + + +l+++l +  y +v+ +++++ al+ll+e++  +Dl+l D+ mpgm+G++ll++   e  +lp+i+++  g  +++   ++ G
  XP_013616215.1  13 VLVVDDDASCLIILEKMLLRLMY-QVTICSQADVALTLLRERKgcFDLVLSDVHMPGMNGYKLLQQVGLEM-DLPVIMMSVDGRTATVMTGINQG 105
                     89*********************.*******************************************6644.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ peel +
  XP_013616215.1 106 ACDYLIKPIRPEELKN 121
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.98E-3410138IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23008.3E-4010149No hitNo description
SMARTSM004481.0E-2811123IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.21112127IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.0E-2113121IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.13E-2714126No hitNo description
Gene3DG3DSA:1.10.10.604.4E-25180240IPR009057Homeodomain-like
SuperFamilySSF466891.67E-16181239IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-22183235IPR006447Myb domain, plants
PfamPF002493.9E-6185234IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MTISDQFPCG LRVLVVDDDA SCLIILEKML LRLMYQVTIC SQADVALTLL RERKGCFDLV  60
LSDVHMPGMN GYKLLQQVGL EMDLPVIMMS VDGRTATVMT GINQGACDYL IKPIRPEELK  120
NIWQHVVRRK CTINKNSISS SSSLESLFSV SGVSEGSLKR RKNKRRVDSE EDDLLDPGNS  180
SKKSRVVWSM ELHQQFVKAI NHLGIETVPK RILELMNVPS LSRENVASHL QKYRLYLKRL  240
SGAASQSRDA ESMERYENIQ AMVSSGQIHP QALAALYGRP IDNHMSGGFG VWIPTDNHFG  300
GSNVSSASNR CFGALDSPSS VAASMSVHGL SSSGNVRQQA DGFSNSTDYR IRQGNGSGIS  360
EESWILGRPL RQRKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-20180241264ARR10-B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in young leaf tissue. {ECO:0000269|PubMed:15173562}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00098PBMTransfer from AT2G01760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013616215.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532221e-116AK353222.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-38-P04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616215.10.0PREDICTED: two-component response regulator ARR14 isoform X2
RefseqXP_013729248.10.0two-component response regulator ARR14 isoform X2
SwissprotQ8L9Y31e-176ARR14_ARATH; Two-component response regulator ARR14
TrEMBLA0A078JN840.0A0A078JN84_BRANA; Two-component response regulator
TrEMBLA0A0D3AVA60.0A0A0D3AVA6_BRAOL; Two-component response regulator
TrEMBLA0A3P6DEH70.0A0A3P6DEH7_BRAOL; Two-component response regulator
STRINGBo2g134560.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.11e-172response regulator 14