PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013616267.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HB-other
Protein Properties Length: 341aa    MW: 37477.3 Da    PI: 8.5854
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013616267.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox16.71.3e-051674955
                    HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
        Homeobox  9 keqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                      +++e+e++ ++  +  p +++ e LA+k            ++ +q+ +WFqNrR+  
  XP_013616267.1 16 LAEVTEMEAVLKQhnTAMPGRDTLEALADKFsdtverkgktVVQFKQIWNWFQNRRYAL 74
                    556677777777544778999999999999999999999888999***********965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-9478IPR009057Homeodomain-like
PROSITE profilePS500718.584577IPR001356Homeobox domain
SMARTSM003890.0026781IPR001356Homeobox domain
CDDcd000868.73E-41375No hitNo description
Gene3DG3DSA:1.10.10.602.7E-71380IPR009057Homeodomain-like
PfamPF167194.3E-41138266IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGRPPSNGSP AFRFNLAEVT EMEAVLKQHN TAMPGRDTLE ALADKFSDTV ERKGKTVVQF  60
KQIWNWFQNR RYALRASRNK APGKLSVSSM PRGLDPTNPT RSVLPPSTGP KPTHMIGNLS  120
GMTPAPPGVM RSGSDNSYLE FEAKSARDGA WYDVQAFLAH RNLEIGDPEV QVRFAGFEVE  180
EDEWINVKRH VRQRSLPCEA SECVAVLAGD LVLCFQEGKD QALYFDAIVL DAQRRRHDVR  240
GCRCRFLVRY SHDQSEQEIV PLRKICRRPE TDYRLQQLHS AANDFANSKP APDAAAKAPL  300
PPSTASAPIV PPDVKDPSLS AASATSAQPS SNAATVPTGS A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A5e-451392704134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B5e-451392704134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A5e-451392704134SHH1 SAWADEE
4iur_B5e-451392704134SHH1 SAWADEE
4iut_A5e-451392704134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B5e-451392704134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A5e-451392704134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B5e-451392704134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A5e-451392704134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B5e-451392704134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.109650.0leaf
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013616267.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0930420.0AY093042.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds.
GenBankBT0034280.0BT003428.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616267.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X3
RefseqXP_013730728.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X4
SwissprotQ8RWJ70.0SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A0D3ACL20.0A0A0D3ACL2_BRAOL; Uncharacterized protein
STRINGBo1g117640.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.30.0sequence-specific DNA binding transcription factors;sequence-specific DNA binding