PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013616668.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 248aa    MW: 26439.2 Da    PI: 9.9906
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013616668.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.89.4e-33150206259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      DgynWrKYGqK+vkgs+fprsYY+Ct + Cpvkkk+ers  d++v++++Y+g+Hnhe
  XP_013616668.1 150 GDGYNWRKYGQKQVKGSDFPRSYYKCTNPACPVKKKIERSV-DGQVTKTIYKGQHNHE 206
                     5****************************************.***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-28141208IPR003657WRKY domain
PROSITE profilePS5081123.778144208IPR003657WRKY domain
SuperFamilySSF1182905.23E-25147208IPR003657WRKY domain
SMARTSM007741.9E-33149207IPR003657WRKY domain
PfamPF031061.0E-24151206IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MASPAAAAVV ASAHQTPVSS VGGGGDSLLD PRSKQNRPTG LMITQPPGMF TVPPGLSPAT  60
LLDSPSFFGL FSPIQGSFGM THQQALAQVT AQGNTVQIQS GSSTQQQTSV TEVPSLPAPV  120
QDSLQAQRVD SAVSVYENRS QPQNADKPAG DGYNWRKYGQ KQVKGSDFPR SYYKCTNPAC  180
PVKKKIERSV DGQVTKTIYK GQHNHEPPQN NKRGGGNNNG SSESSDIANQ FKTSNNSLNK  240
SKRYQETS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-191512081977Probable WRKY transcription factor 4
2ayd_A5e-191512081674WRKY transcription factor 1
2lex_A5e-191512081977Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013616668.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931350.0KM593135.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY17) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616663.10.0PREDICTED: probable WRKY transcription factor 3
RefseqXP_013616664.10.0PREDICTED: probable WRKY transcription factor 3
RefseqXP_013616665.10.0PREDICTED: probable WRKY transcription factor 3
RefseqXP_013616666.10.0PREDICTED: probable WRKY transcription factor 3
RefseqXP_013616667.10.0PREDICTED: probable WRKY transcription factor 3
RefseqXP_013616668.10.0PREDICTED: probable WRKY transcription factor 3
RefseqXP_013616669.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9ZQ701e-111WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A0D3AVS70.0A0A0D3AVS7_BRAOL; Uncharacterized protein
STRINGBo2g137260.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.12e-97WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]