PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013616702.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CAMTA
Protein Properties Length: 159aa    MW: 19058.6 Da    PI: 6.7225
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013616702.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1111.83.9e-35228244104
            CG-1  44 rkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLee 104
                     +k++ryfrkDG++w+kkkdg tv+E+hekLKvg+++vl+cyYah e+n++f+rrcyw+Le+
  XP_013616702.1  22 QKVLRYFRKDGHNWRKKKDGETVKEAHEKLKVGSIDVLHCYYAHEEDNENFHRRCYWMLEQ 82 
                     69*********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010762.3E-251108IPR005559CG-1 DNA-binding domain
PROSITE profilePS5143740.6261101IPR005559CG-1 DNA-binding domain
PfamPF038593.7E-282282IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MFNDSTDFDE LTEPVSPLHS FQKVLRYFRK DGHNWRKKKD GETVKEAHEK LKVGSIDVLH  60
CYYAHEEDNE NFHRRCYWML EQLRFWEPKN GERGGELMSL DMLLLDSKYF LREVSFFSGP  120
ALLGAYPRFW FLRELVLHDK HSSYDPSTTW VLPEPKQPK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013616702.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4938117e-58AB493811.1 Arabidopsis thaliana At5g64220 mRNA for hypothetical protein, partial cds, clone: RAAt5g64220.
GenBankAK2294037e-58AK229403.1 Arabidopsis thaliana mRNA for Calmodulin-binding transcription activator 2, complete cds, clone: RAFL16-66-C08.
GenBankBT0108747e-58BT010874.1 Arabidopsis thaliana At5g64220 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616702.11e-116PREDICTED: uncharacterized protein LOC106323081 isoform X1
TrEMBLA0A3N6UI729e-50A0A3N6UI72_BRACR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1928046
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.22e-36Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains