PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013616703.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CAMTA
Protein Properties Length: 158aa    MW: 18930.4 Da    PI: 6.5119
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013616703.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1110.87.9e-35208143104
            CG-1  43 nrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLee 104
                     + +++ryfrkDG++w+kkkdg tv+E+hekLKvg+++vl+cyYah e+n++f+rrcyw+Le+
  XP_013616703.1  20 SFQVLRYFRKDGHNWRKKKDGETVKEAHEKLKVGSIDVLHCYYAHEEDNENFHRRCYWMLEQ 81 
                     5689********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143740.7711100IPR005559CG-1 DNA-binding domain
SMARTSM010761.2E-241107IPR005559CG-1 DNA-binding domain
PfamPF038595.5E-282181IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MFNDSTDFDE LTEPVSPLHS FQVLRYFRKD GHNWRKKKDG ETVKEAHEKL KVGSIDVLHC  60
YYAHEEDNEN FHRRCYWMLE QLRFWEPKNG ERGGELMSLD MLLLDSKYFL REVSFFSGPA  120
LLGAYPRFWF LRELVLHDKH SSYDPSTTWV LPEPKQPK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013616703.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4938111e-56AB493811.1 Arabidopsis thaliana At5g64220 mRNA for hypothetical protein, partial cds, clone: RAAt5g64220.
GenBankAK2294031e-56AK229403.1 Arabidopsis thaliana mRNA for Calmodulin-binding transcription activator 2, complete cds, clone: RAFL16-66-C08.
GenBankBT0108741e-56BT010874.1 Arabidopsis thaliana At5g64220 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616703.11e-115PREDICTED: uncharacterized protein LOC106323081 isoform X2
TrEMBLA0A3N6UI721e-51A0A3N6UI72_BRACR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.28e-36Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains