PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013616847.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 337aa    MW: 38429.5 Da    PI: 6.991
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013616847.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.61.7e-55221481128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdee++++yLk+kv ++++++  ++ e+d++k+ePwdLpk++k +eke yfF++rd+ky+tg r+nrat+sgyWkatgkdke+++ 
  XP_013616847.1  22 LPPGFRFHPTDEEIITFYLKEKVLDSRFTA-VAMGEADLNKCEPWDLPKRAKMGEKEFYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIFKG 115
                     79*************************999.67***************99999*****************************************9 PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     kg lvg+kktLvfy+grap+gekt+Wvmheyrl
  XP_013616847.1 116 KGCLVGMKKTLVFYRGRAPRGEKTNWVMHEYRL 148
                     *******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.42E-6319174IPR003441NAC domain
PROSITE profilePS5100558.66622173IPR003441NAC domain
PfamPF023653.3E-2923148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAVVVVEEGV VLNHGGEELV DLPPGFRFHP TDEEIITFYL KEKVLDSRFT AVAMGEADLN  60
KCEPWDLPKR AKMGEKEFYF FCQRDRKYPT GMRTNRATES GYWKATGKDK EIFKGKGCLV  120
GMKKTLVFYR GRAPRGEKTN WVMHEYRLDG KYSHHNLPKS ARDEWVVCRV FHKNNPSTTT  180
QQMTRMPIEN LTRMDSLENI DHLLDFSSLP PLMDPSFTGQ HDHHNFKPIN PPTYNISSPI  240
QPHHFNSNYQ SIFNHQGYGS ASGSGSTYNN NKEMIKMEPS LVSVSQETCL SSDVNATTTI  300
EVSSGPVMKQ EMSMTGMVNG SKSYEDLCDL RGILWDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-5191752170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013616847.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6413570.0KP641357.1 Brassica napus NAC transcription factor 87.1 (NAC87.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616847.10.0PREDICTED: NAC domain-containing protein 92-like
SwissprotQ9FK440.0NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A078ENA80.0A0A078ENA8_BRANA; NAC transcription factor 87.1
TrEMBLA0A0D3AJR20.0A0A0D3AJR2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DGY90.0A0A3P6DGY9_BRAOL; Uncharacterized protein
STRINGBo2g015440.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22692775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.10.0Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]