PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013616936.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 294aa    MW: 34025.1 Da    PI: 4.2399
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013616936.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.52.7e-19261804128
             NAM   4 GfrFhPtdeelvveyLkkkvegkk......leleevikevdiykvePwdLpkkvka...eekewyfFskrdkkya....tgkrknra....tksg 81 
                     G+ F+P+d+el++++L +k+e+         e+e++i   ++y+ ePw L++ +++   +++ew++F++r + +     +g++++r      + g
  XP_013616936.1  26 GLYFDPEDQELIKYHLLPKLETYLqpkskdEECEDFIVMKNVYDKEPWLLDH-TNHplfRKNEWFYFVTRTQVSVknigRGRNSKRRiagdNDGG 119
                     99*****************987554455545566689999**********84.222345889*****999988773333344444433343449* PP

             NAM  82 yWkatgkdkevlsk..kgelvglkktLvfy.........kgrapkge.........ktdWvmheyrl 128
                      Wk   k k + ++  +++ +g k+tL f          +     g          +++W+mhey+l
  XP_013616936.1 120 SWKPNAK-KYIEDEeeEKTIIGKKQTLKFTksdnnkrqkR-----GDgtsavvpgsNSSWIMHEYSL 180
                     ***9877.677776446666**********6665443331.....223334444449********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.17623197IPR003441NAC domain
SuperFamilySSF1019411.83E-2424195IPR003441NAC domain
PfamPF023651.2E-1526180IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MSNNYEDGGV YYDPDEIMFN NDEDGGLYFD PEDQELIKYH LLPKLETYLQ PKSKDEECED  60
FIVMKNVYDK EPWLLDHTNH PLFRKNEWFY FVTRTQVSVK NIGRGRNSKR RIAGDNDGGS  120
WKPNAKKYIE DEEEEKTIIG KKQTLKFTKS DNNKRQKRGD GTSAVVPGSN SSWIMHEYSL  180
PDENTFQELV LCKIRKISNS KDEEVEAVEG THDAEEDGTG ELVERFTRTG LDDQQTTEKD  240
DQQEPPMYAL SQSSDPPARL GDNSLPIEVD DDEDEEHVMN QEVDEHLFNS TESF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013616936.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616936.10.0PREDICTED: NAC domain-containing protein 4-like
TrEMBLA0A0D3AL260.0A0A0D3AL26_BRAOL; Uncharacterized protein
STRINGBo2g027010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.12e-14NAC domain containing protein 88