PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013616942.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 204aa    MW: 23230.6 Da    PI: 5.7696
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013616942.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM371e-11311738128
             NAM  38 diykvePwdLpkkvka..eekewyfFskrdkkya....tgkrknra....tksgyWkatgkdkevlsk..kgelvglkktLvfy.........kg 111
                     ++y+ ePw L+++++   +++ew++F++r + +     +g++++r      + g Wk   k k + ++  +++ +g k+tL f          + 
  XP_013616942.1   3 NVYDKEPWLLDHTIHPlfRKNEWFYFVTRTQVSVknigRGRNSKRRiagdNDGGSWKPNAK-KYIEDEenEKTIIGKKQTLKFTksdnnkrqkR- 95 
                     78999*****96444455889*****999988773333344444433343449****9877.677776446666**********6665443331. PP

             NAM 112 rapkge.........ktdWvmheyrl 128
                         g          +++W+mhey+l
  XP_013616942.1  96 ----GDgtsavvpgsNSSWIMHEYSL 117
                     ....223334444449********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.9911134IPR003441NAC domain
SuperFamilySSF1019411.57E-173132IPR003441NAC domain
PfamPF023651.0E-817117IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MKNVYDKEPW LLDHTIHPLF RKNEWFYFVT RTQVSVKNIG RGRNSKRRIA GDNDGGSWKP  60
NAKKYIEDEE NEKTIIGKKQ TLKFTKSDNN KRQKRGDGTS AVVPGSNSSW IMHEYSLPDE  120
NTFQELVLCK IRKIGNSKDE ESEAVEGTHD AEEDGTGELV ERFARTGLDD QQTTEKDDQQ  180
EPPTYGLSQS SDPPARLGDK SLPI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013616942.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616942.11e-151PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A0D3AL401e-150A0A0D3AL40_BRAOL; Uncharacterized protein
STRINGBo2g027150.11e-151(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.13e-10NAC domain containing protein 88