PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013616944.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 202aa    MW: 23471.1 Da    PI: 4.8344
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013616944.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM53.11.1e-1691634128
             NAM   4 GfrFhPtdeelvveyLkkkvegkk......leleevikevdiykvePwdLpkkvka...eekewyfFskrdkkya....tgkrknr.atk...sg 81 
                     G+ F+P+d+el++++  +k+e+         e+e+ i   ++y+ ePw L+++ ++   +++ew++F++r + +      g++++r ++     g
  XP_013616944.1   9 GLYFDPEDQELIKYHQLPKLETYLqpkskdEECEDLIVMKNVYDKEPWLLDNT-NHplfRKNEWFYFVTRTQVSVknigLGSNSKRrIAGdndGG 102
                     99**********9987777665433344444555689999**********842.22345889*****999988773444244444424334559* PP

             NAM  82 yWkatgkdkevlsk..kgelvglkktLvfy.............kgrapkgektdWvmheyrl 128
                      Wk   k k + ++  k++ +g k+tL f              +  a  g++++W+m ey l
  XP_013616944.1 103 SWKPNAK-KYIEDEekKKTIIGKKQTLKFTksdnnkrqkrgdgTSAAVPGSNSSWIMYEYWL 163
                     ***9877.667766446666**********666655544433324666677*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.7466180IPR003441NAC domain
PfamPF023651.2E-139162IPR003441NAC domain
SuperFamilySSF1019416.67E-229178IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MFNNDEDGGL YFDPEDQELI KYHQLPKLET YLQPKSKDEE CEDLIVMKNV YDKEPWLLDN  60
TNHPLFRKNE WFYFVTRTQV SVKNIGLGSN SKRRIAGDND GGSWKPNAKK YIEDEEKKKT  120
IIGKKQTLKF TKSDNNKRQK RGDGTSAAVP GSNSSWIMYE YWLPDENTFQ ELVLCKIRKI  180
TNSKDEEVEA VDVTNDAEED GT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013616944.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616944.11e-149PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A0D3AL421e-147A0A0D3AL42_BRAOL; Uncharacterized protein
STRINGBo2g027170.11e-148(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.11e-12NAC domain containing protein 88