PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013617646.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 156aa    MW: 17355 Da    PI: 8.6822
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013617646.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like44.53.5e-14446246
         G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehv 46
                    p lrWt++LH++Fv+a+e  G  e+AtPk++lel+  k Ltl+hv
  XP_013617646.1  4 PWLRWTTTLHACFVHAIELFGVLERATPKSVLELV--KYLTLAHV 46
                    569******************************96..56888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.48E-6346IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-11446IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-10646IPR006447Myb domain, plants
PfamPF143654.7E-2462140IPR025521Domain of unknown function DUF4409
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MTAPWLRWTT TLHACFVHAI ELFGVLERAT PKSVLELVKY LTLAHVLMSI CVTVAMSTPV  60
LTINSPDGDL IDCMKINDQL ALQHPLLKHH KIQETPTGHM VQKGENSGWQ VWHRSGACPR  120
GSIPVRRSED KNFQKNETVT PNAAADRATR GHQAST
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013617646.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013617646.11e-114PREDICTED: transcription repressor KAN1-like
TrEMBLA0A0D3AU601e-113A0A0D3AU60_BRAOL; Uncharacterized protein
STRINGBo2g125650.11e-114(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2349334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.14e-17G2-like family protein