PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013618084.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 183aa    MW: 21202.3 Da    PI: 9.4658
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013618084.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind60.15.7e-19451372102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F   lye+++d+++++++sws++g+sf+ +++++f ++vLpk+   ++ + FvR  n+Y F+kv+++e+         e++h++F +gk el  +
  XP_013618084.1  45 FADVLYEMVDDPSTDSIVSWSQDGSSFIFWNQDKFCSDVLPKFGLSTSPTFFVRLTNIYLFRKVEESEH--------CEYAHDYFVRGKPELTVE 131
                     77889*************************************9999*******************9995........6***************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+ +
  XP_013618084.1 132 IERQFK 137
                     **9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.8E-2141135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-84568IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.12E-1845134IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.6E-2345135IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.4E-1945135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-896108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MAEKVSARGS SSSSPKVIPM ARKVKEYYRY PAMEAFHKGC VRRYFADVLY EMVDDPSTDS  60
IVSWSQDGSS FIFWNQDKFC SDVLPKFGLS TSPTFFVRLT NIYLFRKVEE SEHCEYAHDY  120
FVRGKPELTV EIERQFKERG APIKLAIKPH EPAYKESRER IRAFMLAKKA ARSLSLKEMG  180
TNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-144513529129Heat shock factor protein 1
5d5v_B5e-144513529129Heat shock factor protein 1
5d5v_D5e-144513529129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.12290.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013618084.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618084.11e-135PREDICTED: heat stress transcription factor B-4b-like
TrEMBLA0A0D3AYH61e-134A0A0D3AYH6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DK381e-134A0A3P6DK38_BRAOL; Uncharacterized protein
STRINGBo2g165560.11e-134(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.14e-19heat shock transcription factor A7A