PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013618155.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 164aa    MW: 18263.8 Da    PI: 10.3322
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013618155.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-1981135155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr+++ +g+W+AeIr+ +   g+r r +lg+f+taeeAa a+++a+ +l g
  XP_013618155.1  81 KKFRGVRQRP-WGKWAAEIRCGRAlKGRRDRLWLGTFDTAEEAALAYDNAAVQLIG 135
                     59********.**********54433367**********************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.8E-361163IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.17E-2381142No hitNo description
Gene3DG3DSA:3.30.730.101.7E-2782143IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-1982144IPR016177DNA-binding domain
SMARTSM003801.5E-3082149IPR001471AP2/ERF domain
PROSITE profilePS5103221.54982143IPR001471AP2/ERF domain
PfamPF008472.2E-1382135IPR001471AP2/ERF domain
PRINTSPR003672.2E-118394IPR001471AP2/ERF domain
PRINTSPR003672.2E-11109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MKRIVRISVT DAEATDSSSD EETEEPCGET TRTQVRRRGK RLVKEIVIDP SDSEDKRGAC  60
KTRFKIRIPA EFLKATTEGK KKFRGVRQRP WGKWAAEIRC GRALKGRRDR LWLGTFDTAE  120
EAALAYDNAA VQLIGPHAPT NFSFPAESQE VKMVAGASAV ARVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-16821421471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013618155.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894011e-116AC189401.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB057E05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618155.11e-116PREDICTED: ethylene-responsive transcription factor ERF070
SwissprotQ9C9952e-84ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBLA0A0D3APU11e-115A0A0D3APU1_BRAOL; Uncharacterized protein
STRINGBo2g070850.11e-116(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71130.18e-64ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]