PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013618654.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 258aa    MW: 28877.2 Da    PI: 7.1623
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013618654.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.32.3e-102470447
                     S-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47
                     WT eE +++ +a + lG +    +W+ Ia+ ++ g++  +++ r+ k+
   XP_013618654.1 24 WTVEENKRFEKALAVLGDKddleSWSNIAALIP-GKSVDDVIKRYKKL 70
                     *********************************.***********996 PP
2Myb_DNA-binding507e-16138182347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ Iar + ++Rt+ q+ s+ qky
   XP_013618654.1 138 PWTEEEHRRFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHAQKY 182
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-51270IPR009057Homeodomain-like
SuperFamilySSF466895.76E-91376IPR009057Homeodomain-like
PROSITE profilePS512937.8051973IPR017884SANT domain
SMARTSM007172.5E-52073IPR001005SANT/Myb domain
CDDcd001671.94E-82470No hitNo description
PfamPF002497.9E-92470IPR001005SANT/Myb domain
PROSITE profilePS5129422.32131187IPR017930Myb domain
SuperFamilySSF466891.52E-17133186IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-18134186IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.1E-13135182IPR009057Homeodomain-like
SMARTSM007171.9E-13135185IPR001005SANT/Myb domain
PfamPF002495.0E-13138182IPR001005SANT/Myb domain
CDDcd001671.52E-11138183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MSSTNGGYQE NTNWIFQEVK DAMWTVEENK RFEKALAVLG DKDDLESWSN IAALIPGKSV  60
DDVIKRYKKL EDDISDIEAG LVPDPGYCSD ASAGDYFFGL ENSGYGYNYV VGGKRSSPAT  120
TDGFRLPMPE KERKKGVPWT EEEHRRFLMG LKKYGKGDWR NIARNFVTTR TPTQVASHAQ  180
KYFIRQLTDG KDKRRSSIHD ITTVNVPDAN APTTATPAAA TVSPTPTNPF DVFLPPKPHH  240
SFAFSPASSY HNTFPQWS
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013618654.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618654.10.0PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H71e-73DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0D3AHE80.0A0A0D3AHE8_BRAOL; Uncharacterized protein
TrEMBLA0A3N6SF970.0A0A3N6SF97_BRACR; Uncharacterized protein
STRINGBo2g002350.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148841619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01200.11e-119MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]