PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013618656.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 194aa    MW: 22695.9 Da    PI: 6.3956
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013618656.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.28.6e-1473124455
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                     ++++rr+ +NRe+ArrsR RK+  ++eL   v+ L +eN++L ++l++ ++ 
  XP_013618656.1  73 DRKQRRMVSNRESARRSRMRKQRHLDELLSQVAWLRSENQQLLDKLNQASDS 124
                     689****************************************999997765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.2E-1270134IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.54272120IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.2E-1173125No hitNo description
PfamPF001701.2E-1173125IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.85E-1374123No hitNo description
CDDcd147021.37E-1875122No hitNo description
PROSITE patternPS0003607792IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MQPNYDSSSF NNMQQQDYFH LNHYYNNLNP STNINNLNLI PYPQIHQEFN LQSPGNNSTT  60
SDEATEDIFV INDRKQRRMV SNRESARRSR MRKQRHLDEL LSQVAWLRSE NQQLLDKLNQ  120
ASDSNDLVIQ ENLRLKEENV ELRQVITSMK KLGGSTSLQG RYCSSSLDHE LDQDFSCITD  180
DPRTHHPSRV VRSD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18693RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00512DAPTransfer from AT5G15830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013618656.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2400870.0AC240087.1 Brassica oleracea clone BOT01-44D22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618656.11e-142PREDICTED: basic leucine zipper 43-like
RefseqXP_013659921.11e-142basic leucine zipper 43
SwissprotQ9FMC29e-31BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A0D3AJ971e-140A0A0D3AJ97_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DK541e-140A0A3P6DK54_BRAOL; Uncharacterized protein
STRINGBo2g012800.11e-141(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106321532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15830.12e-91basic leucine-zipper 3
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]